RNA–Protein interactions for RNA: ENST00000561749.1

SMPD3-202, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-202ENST00000561749 USP17L10C9JJH3 530 aa27.83■■■□□ 2.05
SMPD3-202ENST00000561749 SLC3A2P08195 630 aaKnown RBP27.83■■■□□ 2.05
SMPD3-202ENST00000561749 BACE1P56817 501 aa27.83■■■□□ 2.05
SMPD3-202ENST00000561749 TREML2Q5T2D2 321 aa27.82■■■□□ 2.04
SMPD3-202ENST00000561749 TACC3Q9Y6A5 838 aa27.82■■■□□ 2.04
SMPD3-202ENST00000561749 ZMYM6O95789 1325 aa27.82■■■□□ 2.04
SMPD3-202ENST00000561749 MYH4Q9Y623 1939 aa27.81■■■□□ 2.04
SMPD3-202ENST00000561749 PDE4BQ07343 736 aa27.81■■■□□ 2.04
SMPD3-202ENST00000561749 SH3D19Q5HYK7 790 aa27.81■■■□□ 2.04
SMPD3-202ENST00000561749 CFHR5Q9BXR6 569 aa27.81■■■□□ 2.04
SMPD3-202ENST00000561749 ICA1Q05084 483 aa27.8■■■□□ 2.04
SMPD3-202ENST00000561749 ZNF444Q8N0Y2 327 aaPredicted RBP27.8■■■□□ 2.04
SMPD3-202ENST00000561749 PROCA1Q8NCQ7 364 aaPredicted RBP27.8■■■□□ 2.04
SMPD3-202ENST00000561749 DSCC1Q9BVC3 393 aa27.8■■■□□ 2.04
SMPD3-202ENST00000561749 ZNF287Q9HBT7 754 aa27.8■■■□□ 2.04
SMPD3-202ENST00000561749 ZFYVE28Q9HCC9 887 aa27.8■■■□□ 2.04
SMPD3-202ENST00000561749 ZCCHC17Q9NP64 241 aaKnown RBP27.8■■■□□ 2.04
SMPD3-202ENST00000561749 TMOD4Q9NZQ9 345 aa27.8■■■□□ 2.04
SMPD3-202ENST00000561749 ANAPC4Q9UJX5 808 aa27.8■■■□□ 2.04
SMPD3-202ENST00000561749 AGTPBP1Q9UPW5 1226 aa27.8■■■□□ 2.04
SMPD3-202ENST00000561749 C19orf81C9J6K1 198 aa27.79■■■□□ 2.04
SMPD3-202ENST00000561749 GPR25O00155 361 aa27.79■■■□□ 2.04
SMPD3-202ENST00000561749 SGSM2O43147 1006 aa27.79■■■□□ 2.04
SMPD3-202ENST00000561749 ATP2B2Q01814 1243 aa27.79■■■□□ 2.04
SMPD3-202ENST00000561749 FAM47AQ5JRC9 791 aa27.79■■■□□ 2.04
SMPD3-202ENST00000561749 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.79■■■□□ 2.04
SMPD3-202ENST00000561749 PRDM10Q9NQV6 1147 aa27.79■■■□□ 2.04
SMPD3-202ENST00000561749 EMILIN3Q9NT22 766 aa27.79■■■□□ 2.04
SMPD3-202ENST00000561749 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.79■■■□□ 2.04
SMPD3-202ENST00000561749 A0A1W2PRG0 241 aa27.78■■■□□ 2.04
SMPD3-202ENST00000561749 CYP2C8P10632 490 aa27.78■■■□□ 2.04
SMPD3-202ENST00000561749 PTH1RQ03431 593 aa27.78■■■□□ 2.04
SMPD3-202ENST00000561749 USP17L2Q6R6M4 530 aa27.78■■■□□ 2.04
SMPD3-202ENST00000561749 NBPF3Q9H094 633 aa27.78■■■□□ 2.04
SMPD3-202ENST00000561749 SIAH1Q8IUQ4 282 aa27.77■■■□□ 2.04
SMPD3-202ENST00000561749 TBC1D10CQ8IV04 446 aa27.77■■■□□ 2.04
SMPD3-202ENST00000561749 ZNF296Q8WUU4 475 aaPredicted RBP27.77■■■□□ 2.04
SMPD3-202ENST00000561749 TOMM22Q9NS69 142 aa27.77■■■□□ 2.04
SMPD3-202ENST00000561749 RRP12Q5JTH9 1297 aaKnown RBP27.76■■■□□ 2.03
SMPD3-202ENST00000561749 COL13A1Q5TAT6 717 aaPredicted RBP27.76■■■□□ 2.03
SMPD3-202ENST00000561749 KIAA1683Q9H0B3 1180 aa27.76■■■□□ 2.03
SMPD3-202ENST00000561749 ARHGEF10LQ9HCE6 1279 aa27.76■■■□□ 2.03
SMPD3-202ENST00000561749 TSPY3P0CV98 308 aa27.75■■■□□ 2.03
SMPD3-202ENST00000561749 TSPY8P0CW00 308 aa27.75■■■□□ 2.03
SMPD3-202ENST00000561749 EEF2P13639 858 aaKnown RBP27.75■■■□□ 2.03
SMPD3-202ENST00000561749 TFAP4Q01664 338 aa27.75■■■□□ 2.03
SMPD3-202ENST00000561749 PARK7Q99497 189 aaKnown RBP27.75■■■□□ 2.03
SMPD3-202ENST00000561749 ESYT1Q9BSJ8 1104 aa27.75■■■□□ 2.03
SMPD3-202ENST00000561749 KANSL2Q9H9L4 492 aa27.75■■■□□ 2.03
SMPD3-202ENST00000561749 ZSWIM8A7E2V4 1837 aa27.75■■■□□ 2.03
SMPD3-202ENST00000561749 ZNF213O14771 459 aa27.74■■■□□ 2.03
SMPD3-202ENST00000561749 USP14P54578 494 aa27.74■■■□□ 2.03
SMPD3-202ENST00000561749 CPA4Q9UI42 421 aa27.74■■■□□ 2.03
SMPD3-202ENST00000561749 SLC45A1Q9Y2W3 748 aa27.74■■■□□ 2.03
SMPD3-202ENST00000561749 RANBP6O60518 1105 aaKnown RBP27.73■■■□□ 2.03
SMPD3-202ENST00000561749 TLR2O60603 784 aa27.73■■■□□ 2.03
SMPD3-202ENST00000561749 FKTNO75072 461 aa27.73■■■□□ 2.03
SMPD3-202ENST00000561749 CDC45O75419 566 aa27.73■■■□□ 2.03
SMPD3-202ENST00000561749 NEDD1Q8NHV4 660 aa27.73■■■□□ 2.03
SMPD3-202ENST00000561749 CTNNA3Q9UI47 895 aa27.73■■■□□ 2.03
SMPD3-202ENST00000561749 ADGRA2Q96PE1 1338 aa27.72■■■□□ 2.03
SMPD3-202ENST00000561749 IGKV6D-41A0A0C4DH26 115 aa27.72■■■□□ 2.03
SMPD3-202ENST00000561749 TSPY2A6NKD2 308 aa27.72■■■□□ 2.03
SMPD3-202ENST00000561749 ORC4O43929 436 aa27.72■■■□□ 2.03
SMPD3-202ENST00000561749 KIAA1755Q5JYT7 1200 aa27.72■■■□□ 2.03
SMPD3-202ENST00000561749 AKNAD1Q5T1N1 836 aa27.72■■■□□ 2.03
SMPD3-202ENST00000561749 CEP95Q96GE4 821 aa27.72■■■□□ 2.03
SMPD3-202ENST00000561749 C12orf42Q96LP6 360 aa27.72■■■□□ 2.03
SMPD3-202ENST00000561749 ASCC2Q9H1I8 757 aaPredicted RBP27.72■■■□□ 2.03
SMPD3-202ENST00000561749 PLIN4Q96Q06 1357 aa27.72■■■□□ 2.03
SMPD3-202ENST00000561749 ECM2O94769 699 aaPredicted RBP27.71■■■□□ 2.03
SMPD3-202ENST00000561749 FGRP09769 529 aa27.71■■■□□ 2.03
SMPD3-202ENST00000561749 VCAM1P19320 739 aa27.71■■■□□ 2.03
SMPD3-202ENST00000561749 PABPC4Q13310 644 aaKnown RBP eCLIP27.71■■■□□ 2.03
SMPD3-202ENST00000561749 IMMTQ16891 758 aaKnown RBP27.71■■■□□ 2.03
SMPD3-202ENST00000561749 NOM1Q5C9Z4 860 aaKnown RBP27.71■■■□□ 2.03
SMPD3-202ENST00000561749 MFSD6Q6ZSS7 791 aa27.71■■■□□ 2.03
SMPD3-202ENST00000561749 SMCR8Q8TEV9 937 aaPredicted RBP27.71■■■□□ 2.03
SMPD3-202ENST00000561749 STAG1Q8WVM7 1258 aa27.71■■■□□ 2.03
SMPD3-202ENST00000561749 PNMA3Q9UL41 463 aa27.71■■■□□ 2.03
SMPD3-202ENST00000561749 TMX2Q9Y320 296 aa27.71■■■□□ 2.03
SMPD3-202ENST00000561749 NEDD4P46934 1319 aa27.7■■■□□ 2.03
SMPD3-202ENST00000561749 RAD21O60216 631 aa27.7■■■□□ 2.02
SMPD3-202ENST00000561749 OSBPP22059 807 aa27.7■■■□□ 2.02
SMPD3-202ENST00000561749 IRX3P78415 501 aaPredicted RBP27.7■■■□□ 2.02
SMPD3-202ENST00000561749 SPICE1Q8N0Z3 855 aa27.7■■■□□ 2.02
SMPD3-202ENST00000561749 NKX2-3Q8TAU0 364 aa27.7■■■□□ 2.02
SMPD3-202ENST00000561749 SH2D4AQ9H788 454 aa27.7■■■□□ 2.02
SMPD3-202ENST00000561749 CLIP2Q9UDT6 1046 aa27.7■■■□□ 2.02
SMPD3-202ENST00000561749 NMT2O60551 498 aa27.69■■■□□ 2.02
SMPD3-202ENST00000561749 SP3Q02447 781 aa27.69■■■□□ 2.02
SMPD3-202ENST00000561749 C17orf99Q6UX52 265 aa27.69■■■□□ 2.02
SMPD3-202ENST00000561749 KIAA1211Q6ZU35 1233 aa27.69■■■□□ 2.02
SMPD3-202ENST00000561749 CD99L2Q8TCZ2 262 aa27.69■■■□□ 2.02
SMPD3-202ENST00000561749 NYAP2Q9P242 653 aa27.69■■■□□ 2.02
SMPD3-202ENST00000561749 U3KPZ7 1027 aaPredicted RBP27.69■■■□□ 2.02
SMPD3-202ENST00000561749 HOXA7P31268 230 aaPredicted RBP27.68■■■□□ 2.02
SMPD3-202ENST00000561749 CASC1Q6TDU7 716 aa27.68■■■□□ 2.02
SMPD3-202ENST00000561749 RNF41Q9H4P4 317 aaPredicted RBP27.68■■■□□ 2.02
SMPD3-202ENST00000561749 RPAP3Q9H6T3 665 aaPredicted RBP27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms