RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PNMA1Q8ND90 353 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 SYT17Q9BSW7 474 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.76■■□□□ 1.55
CLN3-209ENST00000561689 DNAJC18Q9H819 358 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 FMNL1O95466 1100 aaPredicted RBP24.75■■□□□ 1.55
CLN3-209ENST00000561689 PPP2R5BQ15173 497 aa24.75■■□□□ 1.55
CLN3-209ENST00000561689 NBPF11Q86T75 865 aa24.75■■□□□ 1.55
CLN3-209ENST00000561689 CEP95Q96GE4 821 aa24.75■■□□□ 1.55
CLN3-209ENST00000561689 TMEM47Q9BQJ4 181 aa24.75■■□□□ 1.55
CLN3-209ENST00000561689 ALG1Q9BT22 464 aa24.75■■□□□ 1.55
CLN3-209ENST00000561689 LMBRD1Q9NUN5 540 aa24.75■■□□□ 1.55
CLN3-209ENST00000561689 CNPY2Q9Y2B0 182 aa24.75■■□□□ 1.55
CLN3-209ENST00000561689 NCLP19338 710 aaKnown RBP24.74■■□□□ 1.55
CLN3-209ENST00000561689 SPDYE2Q495Y8 402 aa24.74■■□□□ 1.55
CLN3-209ENST00000561689 MTMR14Q8NCE2 650 aa24.74■■□□□ 1.55
CLN3-209ENST00000561689 VEZTQ9HBM0 779 aa24.74■■□□□ 1.55
CLN3-209ENST00000561689 MYOZ2Q9NPC6 264 aa24.74■■□□□ 1.55
CLN3-209ENST00000561689 PLEKHA8P1O95397 391 aa24.74■■□□□ 1.55
CLN3-209ENST00000561689 GMPSP49915 693 aaPredicted RBP24.74■■□□□ 1.55
CLN3-209ENST00000561689 RESTQ13127 1097 aa24.74■■□□□ 1.55
CLN3-209ENST00000561689 CTCFLQ8NI51 663 aaPredicted RBP24.74■■□□□ 1.55
CLN3-209ENST00000561689 ARFGEF1Q9Y6D6 1849 aa24.73■■□□□ 1.55
CLN3-209ENST00000561689 GUCY1A2P33402 732 aa24.73■■□□□ 1.55
CLN3-209ENST00000561689 NBPF9Q3BBW0 867 aa24.73■■□□□ 1.55
CLN3-209ENST00000561689 TRIM22Q8IYM9 498 aa24.73■■□□□ 1.55
CLN3-209ENST00000561689 FBXO18Q8NFZ0 1043 aa24.73■■□□□ 1.55
CLN3-209ENST00000561689 RBM28Q9NW13 759 aaKnown RBP24.73■■□□□ 1.55
CLN3-209ENST00000561689 MTMR7Q9Y216 660 aa24.73■■□□□ 1.55
CLN3-209ENST00000561689 WNT10BO00744 389 aa24.73■■□□□ 1.55
CLN3-209ENST00000561689 PTMSP20962 102 aa24.73■■□□□ 1.55
CLN3-209ENST00000561689 RPS12P25398 132 aaKnown RBP24.73■■□□□ 1.55
CLN3-209ENST00000561689 RBM26Q5T8P6 1007 aaKnown RBP24.73■■□□□ 1.55
CLN3-209ENST00000561689 ZNF541Q9H0D2 1346 aa24.72■■□□□ 1.55
CLN3-209ENST00000561689 STK36Q9NRP7 1315 aa24.72■■□□□ 1.55
CLN3-209ENST00000561689 EGFRP00533 1210 aa24.72■■□□□ 1.55
CLN3-209ENST00000561689 ZBED3Q96IU2 234 aaPredicted RBP24.72■■□□□ 1.55
CLN3-209ENST00000561689 TRIM34Q9BYJ4 488 aa24.72■■□□□ 1.55
CLN3-209ENST00000561689 ZNF280AP59817 542 aaPredicted RBP24.71■■□□□ 1.55
CLN3-209ENST00000561689 TMTC3Q6ZXV5 915 aa24.71■■□□□ 1.55
CLN3-209ENST00000561689 CLEC10AQ8IUN9 316 aa24.71■■□□□ 1.55
CLN3-209ENST00000561689 FOXP4Q8IVH2 680 aaPredicted RBP24.71■■□□□ 1.55
CLN3-209ENST00000561689 CSRNP1Q96S65 589 aa24.71■■□□□ 1.55
CLN3-209ENST00000561689 ATRNL1Q5VV63 1379 aa24.71■■□□□ 1.55
CLN3-209ENST00000561689 MPHOSPH10O00566 681 aaKnown RBP24.71■■□□□ 1.55
CLN3-209ENST00000561689 MYO1BO43795 1136 aa24.71■■□□□ 1.55
CLN3-209ENST00000561689 FUT2Q10981 343 aa24.71■■□□□ 1.55
CLN3-209ENST00000561689 MICALL2Q8IY33 904 aa24.71■■□□□ 1.55
CLN3-209ENST00000561689 ZSCAN16Q9H4T2 348 aaPredicted RBP24.71■■□□□ 1.55
CLN3-209ENST00000561689 MTMR4Q9NYA4 1195 aa24.71■■□□□ 1.55
CLN3-209ENST00000561689 PLIN4Q96Q06 1357 aa24.71■■□□□ 1.55
CLN3-209ENST00000561689 FIBPO43427 364 aa24.7■■□□□ 1.54
CLN3-209ENST00000561689 LMNB1P20700 586 aa24.7■■□□□ 1.54
CLN3-209ENST00000561689 USP48Q86UV5 1035 aa24.7■■□□□ 1.54
CLN3-209ENST00000561689 SRBD1Q8N5C6 995 aaKnown RBP24.7■■□□□ 1.54
CLN3-209ENST00000561689 hCG_1642624A0A1W2PR95 340 aa24.69■■□□□ 1.54
CLN3-209ENST00000561689 CNTNAP1P78357 1384 aa24.69■■□□□ 1.54
CLN3-209ENST00000561689 FAM151AQ8WW52 585 aa24.69■■□□□ 1.54
CLN3-209ENST00000561689 IGKV6D-41A0A0C4DH26 115 aa24.69■■□□□ 1.54
CLN3-209ENST00000561689 TOP1P11387 765 aaKnown RBP24.69■■□□□ 1.54
CLN3-209ENST00000561689 KIF5BP33176 963 aa24.69■■□□□ 1.54
CLN3-209ENST00000561689 NOVP48745 357 aa24.69■■□□□ 1.54
CLN3-209ENST00000561689 WASF1Q92558 559 aa24.69■■□□□ 1.54
CLN3-209ENST00000561689 CNOT7Q9UIV1 285 aaKnown RBP24.69■■□□□ 1.54
CLN3-209ENST00000561689 V9GY48 417 aaPredicted RBP24.69■■□□□ 1.54
CLN3-209ENST00000561689 DEXIO95424 95 aa24.68■■□□□ 1.54
CLN3-209ENST00000561689 SHROOM1Q2M3G4 852 aaPredicted RBP24.68■■□□□ 1.54
CLN3-209ENST00000561689 CERKLQ49MI3 558 aaPredicted RBP24.68■■□□□ 1.54
CLN3-209ENST00000561689 KRT40Q6A162 431 aa24.68■■□□□ 1.54
CLN3-209ENST00000561689 RASGRP2Q7LDG7 609 aa24.68■■□□□ 1.54
CLN3-209ENST00000561689 SAMD7Q7Z3H4 446 aa24.68■■□□□ 1.54
CLN3-209ENST00000561689 DPF2Q92785 391 aa24.68■■□□□ 1.54
CLN3-209ENST00000561689 RNF26Q9BY78 433 aaPredicted RBP24.68■■□□□ 1.54
CLN3-209ENST00000561689 TFIP11Q9UBB9 837 aaKnown RBP24.68■■□□□ 1.54
CLN3-209ENST00000561689 SCAF8Q9UPN6 1271 aaKnown RBP24.68■■□□□ 1.54
CLN3-209ENST00000561689 AKAP17AQ02040 695 aaKnown RBP24.67■■□□□ 1.54
CLN3-209ENST00000561689 GRM4Q14833 912 aa24.67■■□□□ 1.54
CLN3-209ENST00000561689 TATDN1Q6P1N9 297 aa24.67■■□□□ 1.54
CLN3-209ENST00000561689 METTL16Q86W50 562 aaKnown RBP24.67■■□□□ 1.54
CLN3-209ENST00000561689 STAG2Q8N3U4 1231 aa24.67■■□□□ 1.54
CLN3-209ENST00000561689 CCDC17Q96LX7 622 aa24.67■■□□□ 1.54
CLN3-209ENST00000561689 TMEM39BQ9GZU3 492 aa24.67■■□□□ 1.54
CLN3-209ENST00000561689 DDX49Q9Y6V7 483 aaKnown RBP24.67■■□□□ 1.54
CLN3-209ENST00000561689 TRIM29Q14134 588 aa24.67■■□□□ 1.54
CLN3-209ENST00000561689 SKOR2Q2VWA4 1001 aaPredicted RBP24.67■■□□□ 1.54
CLN3-209ENST00000561689 TBC1D10BQ4KMP7 808 aaPredicted RBP24.67■■□□□ 1.54
CLN3-209ENST00000561689 FKBP1CQ5VVH2 108 aa24.67■■□□□ 1.54
CLN3-209ENST00000561689 CDAN1Q8IWY9 1227 aa24.67■■□□□ 1.54
CLN3-209ENST00000561689 MAP3K14Q99558 947 aa24.67■■□□□ 1.54
CLN3-209ENST00000561689 CLIP2Q9UDT6 1046 aa24.67■■□□□ 1.54
CLN3-209ENST00000561689 MAD2L2Q9UI95 211 aa24.67■■□□□ 1.54
CLN3-209ENST00000561689 YBX3P16989 372 aaKnown RBP eCLIP24.66■■□□□ 1.54
CLN3-209ENST00000561689 KRT85P78386 507 aa24.66■■□□□ 1.54
CLN3-209ENST00000561689 COL2A1P02458 1487 aaPredicted RBP24.66■■□□□ 1.54
CLN3-209ENST00000561689 SIPA1L1O43166 1804 aa24.66■■□□□ 1.54
CLN3-209ENST00000561689 PRPF3O43395 683 aaKnown RBP24.65■■□□□ 1.54
CLN3-209ENST00000561689 MMP14P50281 582 aa24.65■■□□□ 1.54
CLN3-209ENST00000561689 LRRC47Q8N1G4 583 aaKnown RBP24.65■■□□□ 1.54
CLN3-209ENST00000561689 PIBF1Q8WXW3 757 aa24.65■■□□□ 1.54
CLN3-209ENST00000561689 GZF1Q9H116 711 aaPredicted RBP24.65■■□□□ 1.54
CLN3-209ENST00000561689 CNTNAP5Q8WYK1 1306 aa24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms