RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 MORF4L1Q9UBU8 362 aa21.43■■□□□ 1.02
HDDC3-205ENST00000559898 GJD2Q9UKL4 321 aa21.43■■□□□ 1.02
HDDC3-205ENST00000559898 CNMDO75829 334 aa21.42■■□□□ 1.02
HDDC3-205ENST00000559898 INHAP05111 366 aa21.42■■□□□ 1.02
HDDC3-205ENST00000559898 SLAIN1Q8ND83 568 aa21.42■■□□□ 1.02
HDDC3-205ENST00000559898 RNF208Q9H0X6 261 aa21.42■■□□□ 1.02
HDDC3-205ENST00000559898 PORCNQ9H237 461 aa21.42■■□□□ 1.02
HDDC3-205ENST00000559898 AKR1B1P15121 316 aa21.41■■□□□ 1.02
HDDC3-205ENST00000559898 UBE3CQ15386 1083 aa21.41■■□□□ 1.02
HDDC3-205ENST00000559898 SIAH1Q8IUQ4 282 aa21.41■■□□□ 1.02
HDDC3-205ENST00000559898 C12orf42Q96LP6 360 aa21.41■■□□□ 1.02
HDDC3-205ENST00000559898 FEZ1Q99689 392 aa21.41■■□□□ 1.02
HDDC3-205ENST00000559898 PAGR1Q9BTK6 254 aa21.41■■□□□ 1.02
HDDC3-205ENST00000559898 RLFQ13129 1914 aa21.41■■□□□ 1.02
HDDC3-205ENST00000559898 USP17L12C9JPN9 530 aa21.4■■□□□ 1.02
HDDC3-205ENST00000559898 USP17L21D6R901 530 aa21.4■■□□□ 1.02
HDDC3-205ENST00000559898 MPHOSPH10O00566 681 aaKnown RBP21.4■■□□□ 1.02
HDDC3-205ENST00000559898 VCAM1P19320 739 aa21.4■■□□□ 1.02
HDDC3-205ENST00000559898 IRF5Q13568 498 aa21.4■■□□□ 1.02
HDDC3-205ENST00000559898 OSBP2Q969R2 916 aa21.4■■□□□ 1.02
HDDC3-205ENST00000559898 COA7Q96BR5 231 aa21.4■■□□□ 1.02
HDDC3-205ENST00000559898 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.4■■□□□ 1.02
HDDC3-205ENST00000559898 SLC4A4Q9Y6R1 1079 aa21.4■■□□□ 1.02
HDDC3-205ENST00000559898 C12orf60Q5U649 245 aa21.39■■□□□ 1.01
HDDC3-205ENST00000559898 CTR9Q6PD62 1173 aa21.39■■□□□ 1.01
HDDC3-205ENST00000559898 KIAA1683Q9H0B3 1180 aa21.39■■□□□ 1.01
HDDC3-205ENST00000559898 CABP5Q9NP86 173 aa21.39■■□□□ 1.01
HDDC3-205ENST00000559898 GJA8P48165 433 aa21.38■■□□□ 1.01
HDDC3-205ENST00000559898 ERVK-9P63128 1117 aa21.38■■□□□ 1.01
HDDC3-205ENST00000559898 ERVK-24P63145 666 aa21.38■■□□□ 1.01
HDDC3-205ENST00000559898 CATSPERGQ6ZRH7 1159 aa21.38■■□□□ 1.01
HDDC3-205ENST00000559898 STK11IPQ8N1F8 1099 aa21.38■■□□□ 1.01
HDDC3-205ENST00000559898 PXYLP1Q8TE99 480 aa21.38■■□□□ 1.01
HDDC3-205ENST00000559898 M0R2C6 588 aa21.37■■□□□ 1.01
HDDC3-205ENST00000559898 GJB1P08034 283 aa21.37■■□□□ 1.01
HDDC3-205ENST00000559898 CYP2B6P20813 491 aa21.37■■□□□ 1.01
HDDC3-205ENST00000559898 CDK8P49336 464 aa21.37■■□□□ 1.01
HDDC3-205ENST00000559898 UBXN2AP68543 259 aa21.37■■□□□ 1.01
HDDC3-205ENST00000559898 UBE2Q1Q7Z7E8 422 aa21.37■■□□□ 1.01
HDDC3-205ENST00000559898 KBTBD3Q8NAB2 608 aa21.37■■□□□ 1.01
HDDC3-205ENST00000559898 GPRC5AQ8NFJ5 357 aa21.37■■□□□ 1.01
HDDC3-205ENST00000559898 PI4K2BQ8TCG2 481 aa21.37■■□□□ 1.01
HDDC3-205ENST00000559898 STRBPQ96SI9 672 aaKnown RBP21.37■■□□□ 1.01
HDDC3-205ENST00000559898 SEC62Q99442 399 aaKnown RBP21.37■■□□□ 1.01
HDDC3-205ENST00000559898 RPAP3Q9H6T3 665 aaPredicted RBP21.37■■□□□ 1.01
HDDC3-205ENST00000559898 ATP8A2Q9NTI2 1148 aa21.37■■□□□ 1.01
HDDC3-205ENST00000559898 BTBD7Q9P203 1132 aa21.37■■□□□ 1.01
HDDC3-205ENST00000559898 USP17L15C9J2P7 530 aa21.36■■□□□ 1.01
HDDC3-205ENST00000559898 USP17L13C9JLJ4 530 aa21.36■■□□□ 1.01
HDDC3-205ENST00000559898 USP17L11C9JVI0 530 aa21.36■■□□□ 1.01
HDDC3-205ENST00000559898 USP17L18D6R9N7 530 aa21.36■■□□□ 1.01
HDDC3-205ENST00000559898 USP17L22D6RA61 530 aa21.36■■□□□ 1.01
HDDC3-205ENST00000559898 USP17L17D6RBQ6 530 aa21.36■■□□□ 1.01
HDDC3-205ENST00000559898 USP17L19D6RCP7 530 aa21.36■■□□□ 1.01
HDDC3-205ENST00000559898 USP17L20D6RJB6 530 aa21.36■■□□□ 1.01
HDDC3-205ENST00000559898 USP17L24Q0WX57 530 aa21.36■■□□□ 1.01
HDDC3-205ENST00000559898 U2AF1L4Q8WU68 220 aaKnown RBP21.36■■□□□ 1.01
HDDC3-205ENST00000559898 TRIB2Q92519 343 aa21.36■■□□□ 1.01
HDDC3-205ENST00000559898 PARP14Q460N5 1801 aa21.36■■□□□ 1.01
HDDC3-205ENST00000559898 SPDYE16A6NNV3 312 aaPredicted RBP21.35■■□□□ 1.01
HDDC3-205ENST00000559898 GSG1L2A8MUP6 293 aa21.35■■□□□ 1.01
HDDC3-205ENST00000559898 CCL14Q16627 93 aa21.35■■□□□ 1.01
HDDC3-205ENST00000559898 DEFB118Q96PH6 123 aa21.35■■□□□ 1.01
HDDC3-205ENST00000559898 EPB41L4AQ9HCS5 686 aaPredicted RBP21.35■■□□□ 1.01
HDDC3-205ENST00000559898 SALL3Q9BXA9 1300 aa21.34■■□□□ 1.01
HDDC3-205ENST00000559898 ALPK3Q96L96 1907 aa21.34■■□□□ 1.01
HDDC3-205ENST00000559898 GREB1LQ9C091 1923 aaPredicted RBP21.34■■□□□ 1.01
HDDC3-205ENST00000559898 SGPL1O95470 568 aa21.34■■□□□ 1.01
HDDC3-205ENST00000559898 C16orf86Q6ZW13 317 aa21.34■■□□□ 1.01
HDDC3-205ENST00000559898 GPR142Q7Z601 462 aa21.34■■□□□ 1.01
HDDC3-205ENST00000559898 PAK6Q9NQU5 681 aaPredicted RBP21.34■■□□□ 1.01
HDDC3-205ENST00000559898 A0A0G2JMZ2 1700 aa21.33■■□□□ 1.01
HDDC3-205ENST00000559898 RNF113AO15541 343 aaKnown RBP21.33■■□□□ 1.01
HDDC3-205ENST00000559898 USP14P54578 494 aa21.33■■□□□ 1.01
HDDC3-205ENST00000559898 SPICE1Q8N0Z3 855 aa21.33■■□□□ 1.01
HDDC3-205ENST00000559898 USP6NLQ92738 828 aa21.33■■□□□ 1.01
HDDC3-205ENST00000559898 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.33■■□□□ 1.01
HDDC3-205ENST00000559898 SWAP70Q9UH65 585 aa21.33■■□□□ 1.01
HDDC3-205ENST00000559898 COL11A1P12107 1806 aaPredicted RBP21.32■■□□□ 1
HDDC3-205ENST00000559898 SLC34A2O95436 690 aa21.32■■□□□ 1
HDDC3-205ENST00000559898 MORN1Q5T089 497 aa21.32■■□□□ 1
HDDC3-205ENST00000559898 ZSCAN25Q6NSZ9 544 aa21.32■■□□□ 1
HDDC3-205ENST00000559898 TMEM179Q6ZVK1 233 aa21.32■■□□□ 1
HDDC3-205ENST00000559898 DIS3LQ8TF46 1054 aaKnown RBP21.32■■□□□ 1
HDDC3-205ENST00000559898 APPBP2Q92624 585 aa21.32■■□□□ 1
HDDC3-205ENST00000559898 GPAA1O43292 621 aa21.31■■□□□ 1
HDDC3-205ENST00000559898 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.31■■□□□ 1
HDDC3-205ENST00000559898 RABGAP1Q9Y3P9 1069 aa21.31■■□□□ 1
HDDC3-205ENST00000559898 HMGCRP04035 888 aa21.3■■□□□ 1
HDDC3-205ENST00000559898 EEF2P13639 858 aaKnown RBP21.3■■□□□ 1
HDDC3-205ENST00000559898 ICA1Q05084 483 aa21.3■■□□□ 1
HDDC3-205ENST00000559898 PLEKHH3Q7Z736 793 aa21.3■■□□□ 1
HDDC3-205ENST00000559898 GPATCH3Q96I76 525 aa21.3■■□□□ 1
HDDC3-205ENST00000559898 NUDT12Q9BQG2 462 aa21.3■■□□□ 1
HDDC3-205ENST00000559898 FLRT1Q9NZU1 646 aa21.3■■□□□ 1
HDDC3-205ENST00000559898 TTC41PQ6P2S7 1318 aa21.29■■□□□ 1
HDDC3-205ENST00000559898 MINDY4BA8MYZ0 360 aa21.29■■□□□ 1
HDDC3-205ENST00000559898 H0YGN5 161 aa21.29■■□□□ 1
HDDC3-205ENST00000559898 FARP2O94887 1054 aaPredicted RBP21.29■■□□□ 1
HDDC3-205ENST00000559898 TFRCP02786 760 aaKnown RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms