RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 TCP10L2B9ZVM9 353 aa20.66■□□□□ 0.9
SNX1-208ENST00000559844 WTAPQ15007 396 aa20.66■□□□□ 0.9
SNX1-208ENST00000559844 RAB11FIP4Q86YS3 637 aa20.66■□□□□ 0.9
SNX1-208ENST00000559844 MAPKAPK5Q8IW41 473 aa20.66■□□□□ 0.9
SNX1-208ENST00000559844 FBXO18Q8NFZ0 1043 aa20.66■□□□□ 0.9
SNX1-208ENST00000559844 POTEIP0CG38 1075 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 POTEJP0CG39 1038 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 TPRNQ4KMQ1 711 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 MICU3Q86XE3 530 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 IDI2Q9BXS1 227 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 DDX4Q9NQI0 724 aaKnown RBP20.65■□□□□ 0.9
SNX1-208ENST00000559844 ATP8A2Q9NTI2 1148 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 FLT1P17948 1338 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 ADD1P35611 737 aaKnown RBP20.65■□□□□ 0.9
SNX1-208ENST00000559844 GUCY1B3Q02153 619 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 TCP10Q12799 353 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 BRAPQ7Z569 592 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 PPP1R9BQ96SB3 815 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 UBAC1Q9BSL1 405 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 SENP2Q9HC62 589 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 RCOR1Q9UKL0 485 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 CLEC11AQ9Y240 323 aa20.65■□□□□ 0.9
SNX1-208ENST00000559844 DDX60LQ5H9U9 1706 aaKnown RBP20.64■□□□□ 0.89
SNX1-208ENST00000559844 ZC3H15Q8WU90 426 aaKnown RBP20.64■□□□□ 0.89
SNX1-208ENST00000559844 DDX19AQ9NUU7 478 aaKnown RBP20.64■□□□□ 0.89
SNX1-208ENST00000559844 FAM198AQ9UFP1 575 aa20.64■□□□□ 0.89
SNX1-208ENST00000559844 STK36Q9NRP7 1315 aa20.64■□□□□ 0.89
SNX1-208ENST00000559844 PPFIA3O75145 1194 aa20.63■□□□□ 0.89
SNX1-208ENST00000559844 TNFAIP1Q13829 316 aa20.63■□□□□ 0.89
SNX1-208ENST00000559844 FKBP1CQ5VVH2 108 aa20.63■□□□□ 0.89
SNX1-208ENST00000559844 APOBEC3FQ8IUX4 373 aaKnown RBP20.63■□□□□ 0.89
SNX1-208ENST00000559844 DCPSQ96C86 337 aaKnown RBP20.63■□□□□ 0.89
SNX1-208ENST00000559844 DCP1AQ9NPI6 582 aaPredicted RBP20.63■□□□□ 0.89
SNX1-208ENST00000559844 FGRP09769 529 aa20.63■□□□□ 0.89
SNX1-208ENST00000559844 CDC27P30260 824 aa20.63■□□□□ 0.89
SNX1-208ENST00000559844 PITPNM2Q9BZ72 1349 aa20.62■□□□□ 0.89
SNX1-208ENST00000559844 CCDC196A0A1B0GTZ2 297 aa20.62■□□□□ 0.89
SNX1-208ENST00000559844 SLC3A2P08195 630 aaKnown RBP20.62■□□□□ 0.89
SNX1-208ENST00000559844 TNNI2P48788 182 aa20.62■□□□□ 0.89
SNX1-208ENST00000559844 CTR9Q6PD62 1173 aa20.62■□□□□ 0.89
SNX1-208ENST00000559844 BICD2Q8TD16 824 aa20.62■□□□□ 0.89
SNX1-208ENST00000559844 WASF1Q92558 559 aa20.62■□□□□ 0.89
SNX1-208ENST00000559844 ALG1Q9BT22 464 aa20.62■□□□□ 0.89
SNX1-208ENST00000559844 NUP62CLQ9H1M0 184 aa20.62■□□□□ 0.89
SNX1-208ENST00000559844 ARPP21Q9UBL0 812 aaPredicted RBP20.62■□□□□ 0.89
SNX1-208ENST00000559844 MKRN1Q9UHC7 482 aaKnown RBP20.62■□□□□ 0.89
SNX1-208ENST00000559844 LAMB1P07942 1786 aa20.62■□□□□ 0.89
SNX1-208ENST00000559844 CNTNAP1P78357 1384 aa20.62■□□□□ 0.89
SNX1-208ENST00000559844 PPP2R5BQ15173 497 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 NTRK3Q16288 839 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 ZFPM1Q8IX07 1006 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 PGBD1Q96JS3 809 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 OSBPL5Q9H0X9 879 aaPredicted RBP20.61■□□□□ 0.89
SNX1-208ENST00000559844 MCM9Q9NXL9 1143 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 PGAP2Q9UHJ9 254 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 SAP30BPQ9UHR5 308 aaKnown RBP20.61■□□□□ 0.89
SNX1-208ENST00000559844 ENTPD3O75355 529 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 NPM3O75607 178 aaKnown RBP20.61■□□□□ 0.89
SNX1-208ENST00000559844 LIG1P18858 919 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 RXRAP19793 462 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 NT5C2P49902 561 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 SSRP1Q08945 709 aaKnown RBP20.61■□□□□ 0.89
SNX1-208ENST00000559844 RTN1Q16799 776 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 SBK1Q52WX2 424 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 FAM83AQ86UY5 434 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 LDHDQ86WU2 507 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 USP28Q96RU2 1077 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 DEFB129Q9H1M3 183 aa20.61■□□□□ 0.89
SNX1-208ENST00000559844 FAM217BQ9NTX9 383 aaPredicted RBP20.61■□□□□ 0.89
SNX1-208ENST00000559844 IFNAR1P17181 557 aa20.6■□□□□ 0.89
SNX1-208ENST00000559844 TRIM29Q14134 588 aa20.6■□□□□ 0.89
SNX1-208ENST00000559844 RASA3Q14644 834 aa20.6■□□□□ 0.89
SNX1-208ENST00000559844 SLC4A8Q2Y0W8 1093 aa20.6■□□□□ 0.89
SNX1-208ENST00000559844 UVSSAQ2YD98 709 aa20.6■□□□□ 0.89
SNX1-208ENST00000559844 SULF1Q8IWU6 871 aa20.6■□□□□ 0.89
SNX1-208ENST00000559844 ZSCAN29Q8IWY8 852 aaPredicted RBP20.6■□□□□ 0.89
SNX1-208ENST00000559844 STK11IPQ8N1F8 1099 aa20.6■□□□□ 0.89
SNX1-208ENST00000559844 TRIM44Q96DX7 344 aaPredicted RBP20.6■□□□□ 0.89
SNX1-208ENST00000559844 ZKSCAN3Q9BRR0 538 aa20.6■□□□□ 0.89
SNX1-208ENST00000559844 TMEM39BQ9GZU3 492 aa20.6■□□□□ 0.89
SNX1-208ENST00000559844 RTEL1Q9NZ71 1219 aa20.6■□□□□ 0.89
SNX1-208ENST00000559844 USP17L12C9JPN9 530 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 USP17L21D6R901 530 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 FMNL1O95466 1100 aaPredicted RBP20.59■□□□□ 0.89
SNX1-208ENST00000559844 KRT26Q7Z3Y9 468 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 CCDC144CPQ8IYA2 1237 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 FAM43AQ8N2R8 423 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 ZNF784Q8NCA9 323 aaPredicted RBP20.59■□□□□ 0.89
SNX1-208ENST00000559844 FAM151AQ8WW52 585 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 MYL10Q9BUA6 226 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 ORC4O43929 436 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 SEC23AQ15436 765 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 MAP1SQ66K74 1059 aaPredicted RBP20.59■□□□□ 0.89
SNX1-208ENST00000559844 OTUD7BQ6GQQ9 843 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 IQCA1Q86XH1 822 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 TRIM22Q8IYM9 498 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 ZNF654Q8IZM8 581 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 ZSCAN10Q96SZ4 725 aaPredicted RBP20.59■□□□□ 0.89
SNX1-208ENST00000559844 TNKSO95271 1327 aa20.59■□□□□ 0.89
SNX1-208ENST00000559844 ADM5C9JUS6 153 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms