RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 UBAC1Q9BSL1 405 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 LRRC2Q9BYS8 371 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 PDRG1Q9NUG6 133 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.32□□□□□ -0.6
CUX1-216ENST00000558469 ERICH2A1L162 156 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 IFIT3O14879 490 aaKnown RBP11.31□□□□□ -0.6
CUX1-216ENST00000558469 MAP3K9P80192 1104 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 FGD1P98174 961 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 SART3Q15020 963 aaKnown RBP11.31□□□□□ -0.6
CUX1-216ENST00000558469 CST9Q5W186 159 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 Q6ZUG5 572 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 TMEM179Q6ZVK1 233 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 C2orf69Q8N8R5 385 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.31□□□□□ -0.6
CUX1-216ENST00000558469 ZSCAN10Q96SZ4 725 aaPredicted RBP11.31□□□□□ -0.6
CUX1-216ENST00000558469 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.31□□□□□ -0.6
CUX1-216ENST00000558469 GBA2Q9HCG7 927 aaPredicted RBP11.31□□□□□ -0.6
CUX1-216ENST00000558469 IL17RBQ9NRM6 502 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 TCP11L1Q9NUJ3 509 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.31□□□□□ -0.6
CUX1-216ENST00000558469 ZBTB21Q9ULJ3 1066 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 WDR19Q8NEZ3 1342 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 PASKQ96RG2 1323 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 PTPRFP10586 1907 aa11.31□□□□□ -0.6
CUX1-216ENST00000558469 PLIN4Q96Q06 1357 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 UBE2Q2LH0YL09 131 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 ASNSP08243 561 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 GUCY1A2P33402 732 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 SEPT2Q15019 361 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 MAP3K11Q16584 847 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 CCDC178Q5BJE1 867 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 TMEM67Q5HYA8 995 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.3□□□□□ -0.6
CUX1-216ENST00000558469 CLEC10AQ8IUN9 316 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 ANKRD13AQ8IZ07 590 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 SCYL3Q8IZE3 742 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 IGDCC4Q8TDY8 1250 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 CEP95Q96GE4 821 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 TMEM87BQ96K49 555 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 KANSL2Q9H9L4 492 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 GPHNQ9NQX3 736 aaPredicted RBP11.3□□□□□ -0.6
CUX1-216ENST00000558469 MTMR4Q9NYA4 1195 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 CSADQ9Y600 493 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 TNKSO95271 1327 aa11.3□□□□□ -0.6
CUX1-216ENST00000558469 IGKV6D-41A0A0C4DH26 115 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 SH2B2O14492 632 aaPredicted RBP11.29□□□□□ -0.6
CUX1-216ENST00000558469 FKBP1BP68106 108 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 ATP2B2Q01814 1243 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 FSTL1Q12841 308 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 VGLL4Q14135 290 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 WTAPQ15007 396 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 SEC23AQ15436 765 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 CCDC84Q86UT8 332 aaPredicted RBP11.29□□□□□ -0.6
CUX1-216ENST00000558469 ENAHQ8N8S7 591 aaPredicted RBP11.29□□□□□ -0.6
CUX1-216ENST00000558469 CLMNQ96JQ2 1002 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 TTC14Q96N46 770 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 ALDH8A1Q9H2A2 487 aaPredicted RBP11.29□□□□□ -0.6
CUX1-216ENST00000558469 LY9Q9HBG7 655 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 SENP2Q9HC62 589 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 PICK1Q9NRD5 415 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 TSHZ2Q9NRE2 1034 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 GINM1Q9NU53 330 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 CLIP2Q9UDT6 1046 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 STX8Q9UNK0 236 aa11.29□□□□□ -0.6
CUX1-216ENST00000558469 ST18O60284 1047 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 TTLL1O95922 423 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 EEF2P13639 858 aaKnown RBP11.28□□□□□ -0.6
CUX1-216ENST00000558469 CD44P16070 742 aaKnown RBP11.28□□□□□ -0.6
CUX1-216ENST00000558469 PTPRAP18433 802 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 AK2P54819 239 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 ICA1Q05084 483 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 TOB2Q14106 344 aaPredicted RBP11.28□□□□□ -0.6
CUX1-216ENST00000558469 PPP4R3BQ5MIZ7 849 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 NOL9Q5SY16 702 aaKnown RBP11.28□□□□□ -0.6
CUX1-216ENST00000558469 LDLRAD1Q5T700 205 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 IFIT1BQ5T764 474 aaKnown RBP11.28□□□□□ -0.6
CUX1-216ENST00000558469 RCSD1Q6JBY9 416 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 NFXL1Q6ZNB6 911 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 NOL8Q76FK4 1167 aaKnown RBP11.28□□□□□ -0.6
CUX1-216ENST00000558469 DGKHQ86XP1 1220 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 BRF1Q92994 677 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 LARP6Q9BRS8 491 aaKnown RBP11.28□□□□□ -0.6
CUX1-216ENST00000558469 MTA3Q9BTC8 594 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 ELP3Q9H9T3 547 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 SNCAIPQ9Y6H5 919 aa11.28□□□□□ -0.6
CUX1-216ENST00000558469 MYH6P13533 1939 aa11.27□□□□□ -0.6
CUX1-216ENST00000558469 CCDC69A6NI79 296 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 USP17L5A8MUK1 530 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 LIFRP42702 1097 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 APOBRQ0VD83 1088 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 ANKRD1Q15327 319 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 SIAH1Q8IUQ4 282 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 TMTC2Q8N394 836 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 FBXL16Q8N461 479 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 ANKS1AQ92625 1134 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 SLC10A4Q96EP9 437 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 TMEM47Q9BQJ4 181 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 KAT14Q9H8E8 782 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 ARHGEF10LQ9HCE6 1279 aa11.27□□□□□ -0.61
CUX1-216ENST00000558469 NYAP2Q9P242 653 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms