RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 TAF5LO75529 589 aa12.36□□□□□ -0.43
USP3-206ENST00000558157 WDHD1O75717 1129 aaPredicted RBP12.36□□□□□ -0.43
USP3-206ENST00000558157 PDE8BO95263 885 aa12.36□□□□□ -0.43
USP3-206ENST00000558157 CEBPZQ03701 1054 aaKnown RBP12.36□□□□□ -0.43
USP3-206ENST00000558157 CHRNDQ07001 517 aa12.36□□□□□ -0.43
USP3-206ENST00000558157 CFAP100Q494V2 611 aa12.36□□□□□ -0.43
USP3-206ENST00000558157 XAGE2Q96GT9 111 aa12.36□□□□□ -0.43
USP3-206ENST00000558157 PCDHA7Q9UN72 937 aa12.36□□□□□ -0.43
USP3-206ENST00000558157 NEDD4P46934 1319 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 EBAG9O00559 213 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 PFKFB2O60825 505 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 N4BP1O75113 896 aaKnown RBP12.35□□□□□ -0.43
USP3-206ENST00000558157 YEATS4O95619 227 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 ATP5JP18859 108 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 LMOD1P29536 600 aaPredicted RBP12.35□□□□□ -0.43
USP3-206ENST00000558157 STK3Q13188 491 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 CNPY4Q8N129 248 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 HSD3B7Q9H2F3 369 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 BSDC1Q9NW68 430 aaPredicted RBP12.35□□□□□ -0.43
USP3-206ENST00000558157 A0A087WWV3 80 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 A6NNZ2 444 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 CCDC175P0C221 793 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 PUM3Q15397 648 aaKnown RBP12.35□□□□□ -0.43
USP3-206ENST00000558157 TUBB8Q3ZCM7 444 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 CRY2Q49AN0 593 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 MAP9Q49MG5 647 aa12.35□□□□□ -0.43
USP3-206ENST00000558157 FAM177A1Q8N128 213 aaPredicted RBP12.35□□□□□ -0.43
USP3-206ENST00000558157 RPGRQ92834 1020 aaKnown RBP12.35□□□□□ -0.43
USP3-206ENST00000558157 SNAP23O00161 211 aa12.34□□□□□ -0.43
USP3-206ENST00000558157 KIF3CO14782 793 aa12.34□□□□□ -0.43
USP3-206ENST00000558157 RNF40O75150 1001 aa12.34□□□□□ -0.43
USP3-206ENST00000558157 FGFR2P21802 821 aa12.34□□□□□ -0.43
USP3-206ENST00000558157 NDUFA8P51970 172 aa12.34□□□□□ -0.43
USP3-206ENST00000558157 RPS8P62241 208 aaKnown RBP12.34□□□□□ -0.43
USP3-206ENST00000558157 NMIQ13287 307 aaPredicted RBP12.34□□□□□ -0.43
USP3-206ENST00000558157 WHAMMP3Q1A5X7 153 aa12.34□□□□□ -0.43
USP3-206ENST00000558157 PNKPQ96T60 521 aa12.34□□□□□ -0.43
USP3-206ENST00000558157 NDUFB9Q9Y6M9 179 aa12.34□□□□□ -0.43
USP3-206ENST00000558157 PPP1R12AO14974 1030 aaPredicted RBP12.33□□□□□ -0.43
USP3-206ENST00000558157 KIF5CO60282 957 aa12.33□□□□□ -0.43
USP3-206ENST00000558157 PRPF6O94906 941 aaKnown RBP12.33□□□□□ -0.43
USP3-206ENST00000558157 HMGB1P09429 215 aaKnown RBP12.33□□□□□ -0.43
USP3-206ENST00000558157 GRAPQ13588 217 aa12.33□□□□□ -0.43
USP3-206ENST00000558157 KIF4BQ2VIQ3 1234 aa12.33□□□□□ -0.43
USP3-206ENST00000558157 SLC51AQ86UW1 340 aa12.33□□□□□ -0.43
USP3-206ENST00000558157 SPATS2Q86XZ4 545 aaKnown RBP12.33□□□□□ -0.43
USP3-206ENST00000558157 PRPF38AQ8NAV1 312 aaKnown RBP12.33□□□□□ -0.43
USP3-206ENST00000558157 GRAPLQ8TC17 118 aaPredicted RBP12.33□□□□□ -0.43
USP3-206ENST00000558157 NEK1Q96PY6 1258 aa12.33□□□□□ -0.43
USP3-206ENST00000558157 NAA15Q9BXJ9 866 aaKnown RBP12.33□□□□□ -0.43
USP3-206ENST00000558157 RBM28Q9NW13 759 aaKnown RBP12.33□□□□□ -0.43
USP3-206ENST00000558157 TUBE1Q9UJT0 475 aa12.33□□□□□ -0.43
USP3-206ENST00000558157 TTC39AQ5SRH9 613 aa12.33□□□□□ -0.44
USP3-206ENST00000558157 NSUN7Q8NE18 718 aaKnown RBP12.33□□□□□ -0.44
USP3-206ENST00000558157 LPIN2Q92539 896 aa12.33□□□□□ -0.44
USP3-206ENST00000558157 KAT2BQ92831 832 aa12.33□□□□□ -0.44
USP3-206ENST00000558157 UPF1Q92900 1129 aaKnown RBP eCLIP12.33□□□□□ -0.44
USP3-206ENST00000558157 EDC3Q96F86 508 aaKnown RBP12.33□□□□□ -0.44
USP3-206ENST00000558157 POLR3EQ9NVU0 708 aa12.33□□□□□ -0.44
USP3-206ENST00000558157 RAI14Q9P0K7 980 aa12.33□□□□□ -0.44
USP3-206ENST00000558157 MINPP1Q9UNW1 487 aa12.33□□□□□ -0.44
USP3-206ENST00000558157 CCDC189A1A4V9 331 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 KLRG2A4D1S0 409 aaPredicted RBP12.32□□□□□ -0.44
USP3-206ENST00000558157 TMCO5BA8MYB1 307 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 SLC5A1P13866 664 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 GBP6Q6ZN66 633 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 LINC00301Q8NCQ3 95 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 BRIP1Q9BX63 1249 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 GNL3LQ9NVN8 582 aaKnown RBP12.32□□□□□ -0.44
USP3-206ENST00000558157 FAM169AQ9Y6X4 670 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 A0A1B0GVL5 298 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 ZNF202O95125 648 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 ATP1A3P13637 1013 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 SCRN1Q12765 414 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 NEDD9Q14511 834 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 SPECC1LQ69YQ0 1117 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 KCNV1Q6PIU1 500 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 TBC1D22AQ8WUA7 517 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 RBM17Q96I25 401 aaKnown RBP12.32□□□□□ -0.44
USP3-206ENST00000558157 CABS1Q96KC9 395 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 FAM227BQ96M60 508 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 HAUS7Q99871 368 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 LRRC37AA6NMS7 1700 aa12.32□□□□□ -0.44
USP3-206ENST00000558157 SALL1Q9NSC2 1324 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 CTAGE15A4D2H0 777 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 CTAGE9A4FU28 777 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 IFIT1P09914 478 aaKnown RBP12.31□□□□□ -0.44
USP3-206ENST00000558157 CTAGE8P0CG41 777 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 ERCC3P19447 782 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 INPP5BP32019 993 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 VSNL1P62760 191 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 SF3A1Q15459 793 aaKnown RBP12.31□□□□□ -0.44
USP3-206ENST00000558157 TOGARAM2Q6ZUX3 1019 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 CTAGE6Q86UF2 777 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 CTAGE4Q8IX94 777 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 TC2NQ8N9U0 490 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 GIMAP7Q8NHV1 300 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 FBXW7Q969H0 707 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 TCEANC2Q96MN5 208 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 PANX2Q96RD6 677 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms