RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PPP6R2O75170 966 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 TBX2Q13207 712 aaPredicted RBP14.04□□□□□ -0.16
LDLR-205ENST00000557933 RSRC2Q7L4I2 434 aaKnown RBP14.04□□□□□ -0.16
LDLR-205ENST00000557933 RSPH14Q9UHP6 348 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 ASAP1Q9ULH1 1129 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 GUCA1BQ9UMX6 200 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 CCP110O43303 1012 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 STX10O60499 249 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 ADGRG1Q9Y653 693 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 RFX7Q2KHR2 1363 aa14.03□□□□□ -0.16
LDLR-205ENST00000557933 BCL9O00512 1426 aa14.03□□□□□ -0.16
LDLR-205ENST00000557933 ADAMTS3O15072 1205 aa14.03□□□□□ -0.16
LDLR-205ENST00000557933 TXLNAP40222 546 aa14.03□□□□□ -0.16
LDLR-205ENST00000557933 SAFBQ15424 915 aaKnown RBP eCLIP14.03□□□□□ -0.16
LDLR-205ENST00000557933 JAKMIP3Q5VZ66 844 aa14.03□□□□□ -0.16
LDLR-205ENST00000557933 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.03□□□□□ -0.162e-9■■□□□ 12.3
LDLR-205ENST00000557933 KCPQ6ZWJ8 1503 aa14.03□□□□□ -0.16
LDLR-205ENST00000557933 VEGFAP15692 232 aaPredicted RBP14.03□□□□□ -0.16
LDLR-205ENST00000557933 ZNF18P17022 549 aa14.03□□□□□ -0.16
LDLR-205ENST00000557933 LCORLQ8N3X6 602 aa14.03□□□□□ -0.16
LDLR-205ENST00000557933 KIF5CO60282 957 aa14.02□□□□□ -0.16
LDLR-205ENST00000557933 CDKL5O76039 1030 aa14.02□□□□□ -0.16
LDLR-205ENST00000557933 VPS72Q15906 364 aa14.02□□□□□ -0.16
LDLR-205ENST00000557933 RTN1Q16799 776 aa14.02□□□□□ -0.16
LDLR-205ENST00000557933 IFNL3Q8IZI9 196 aa14.02□□□□□ -0.16
LDLR-205ENST00000557933 SYMPKQ92797 1274 aaKnown RBP14.02□□□□□ -0.16
LDLR-205ENST00000557933 NUP88Q99567 741 aaPredicted RBP14.02□□□□□ -0.16
LDLR-205ENST00000557933 CHP1Q99653 195 aa14.02□□□□□ -0.16
LDLR-205ENST00000557933 ABCF2Q9UG63 623 aa14.02□□□□□ -0.16
LDLR-205ENST00000557933 MYO1CO00159 1063 aa14.02□□□□□ -0.17
LDLR-205ENST00000557933 MMP1P03956 469 aa14.02□□□□□ -0.17
LDLR-205ENST00000557933 NUTM2AQ8IVF1 878 aaPredicted RBP14.02□□□□□ -0.17
LDLR-205ENST00000557933 TTLL11Q8NHH1 800 aa14.02□□□□□ -0.17
LDLR-205ENST00000557933 SRRTQ9BXP5 876 aaKnown RBP14.02□□□□□ -0.17
LDLR-205ENST00000557933 AKAP2Q9Y2D5 859 aa14.02□□□□□ -0.17
LDLR-205ENST00000557933 DOT1LQ8TEK3 1739 aa14.02□□□□□ -0.17
LDLR-205ENST00000557933 GYPCP04921 128 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 ZFYP08048 801 aaPredicted RBP14.01□□□□□ -0.17
LDLR-205ENST00000557933 PSMB7Q99436 277 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 JAG2Q9Y219 1238 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 SYNRGQ9UMZ2 1314 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 TRIM49BA6NDI0 452 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 N4BP3O15049 544 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 ACTN4O43707 911 aaKnown RBP14.01□□□□□ -0.17
LDLR-205ENST00000557933 ERVK-24P63145 666 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 MORC3Q14149 939 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 NR1I3Q14994 352 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 TTC19Q6DKK2 380 aaPredicted RBP14.01□□□□□ -0.17
LDLR-205ENST00000557933 STRBPQ96SI9 672 aaKnown RBP14.01□□□□□ -0.17
LDLR-205ENST00000557933 GPR108Q9NPR9 543 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 TRMT112Q9UI30 125 aaKnown RBP14.01□□□□□ -0.17
LDLR-205ENST00000557933 PLEKHA8P1O95397 391 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 PTPREP23469 700 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 KCNJ6P48051 423 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 TCIRG1Q13488 830 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 MFSD6Q6ZSS7 791 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 RABGGTAQ92696 567 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 HOOK1Q9UJC3 728 aaKnown RBP14.01□□□□□ -0.17
LDLR-205ENST00000557933 SLC4A4Q9Y6R1 1079 aa14.01□□□□□ -0.17
LDLR-205ENST00000557933 ATRNO75882 1429 aa14□□□□□ -0.17
LDLR-205ENST00000557933 TULP2O00295 520 aa14□□□□□ -0.17
LDLR-205ENST00000557933 BCAMP50895 628 aa14□□□□□ -0.17
LDLR-205ENST00000557933 GPS2Q13227 327 aa14□□□□□ -0.17
LDLR-205ENST00000557933 RASGRF1Q13972 1273 aa14□□□□□ -0.17
LDLR-205ENST00000557933 WTAPQ15007 396 aa14□□□□□ -0.17
LDLR-205ENST00000557933 SRGAP1Q7Z6B7 1085 aa14□□□□□ -0.17
LDLR-205ENST00000557933 TRIM22Q8IYM9 498 aa14□□□□□ -0.17
LDLR-205ENST00000557933 TXLNBQ8N3L3 684 aa14□□□□□ -0.17
LDLR-205ENST00000557933 DRC1Q96MC2 740 aa14□□□□□ -0.17
LDLR-205ENST00000557933 V9GY48 417 aaPredicted RBP14□□□□□ -0.17
LDLR-205ENST00000557933 LRRIQ3A6PVS8 624 aaPredicted RBP14□□□□□ -0.17
LDLR-205ENST00000557933 NMT2O60551 498 aa14□□□□□ -0.17
LDLR-205ENST00000557933 BEND6Q5SZJ8 279 aaPredicted RBP14□□□□□ -0.17
LDLR-205ENST00000557933 RREB1Q92766 1687 aa14□□□□□ -0.17
LDLR-205ENST00000557933 DNAJC21Q5F1R6 531 aaKnown RBP13.99□□□□□ -0.17
LDLR-205ENST00000557933 RRAGBQ5VZM2 374 aa13.99□□□□□ -0.17
LDLR-205ENST00000557933 APTXQ7Z2E3 356 aaKnown RBP13.99□□□□□ -0.17
LDLR-205ENST00000557933 ENOX1Q8TC92 643 aaKnown RBP13.99□□□□□ -0.17
LDLR-205ENST00000557933 GDAQ9Y2T3 454 aa13.99□□□□□ -0.17
LDLR-205ENST00000557933 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.99□□□□□ -0.17
LDLR-205ENST00000557933 RIPOR2Q9Y4F9 1068 aa13.99□□□□□ -0.17
LDLR-205ENST00000557933 IRS4O14654 1257 aaPredicted RBP13.98□□□□□ -0.17
LDLR-205ENST00000557933 CIAO1O76071 339 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 PLCD1P51178 756 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 MLKLQ8NB16 471 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 RASGRP4Q8TDF6 673 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 UBXN6Q9BZV1 441 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 EHD4Q9H223 541 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 CDC23Q9UJX2 597 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 A0A1B0GTH6 734 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 FAM170AA1A519 330 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 CTAGE9A4FU28 777 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 ZNF185O15231 689 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 MFAP3LO75121 409 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 FMNL1O95466 1100 aaPredicted RBP13.98□□□□□ -0.17
LDLR-205ENST00000557933 MCM7P33993 719 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 DNA2P51530 1060 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 CUL4BQ13620 913 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 PAGE5Q96GU1 130 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 RRP15Q9Y3B9 282 aaKnown RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms