RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 PBX1P40424 430 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 CHMP4BP1P59074 171 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 WTAPQ15007 396 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 PUM3Q15397 648 aaKnown RBP18.53■□□□□ 0.56
SHMT2-232ENST00000557487 FAM182BQ5T319 152 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 MARCH10Q8NA82 808 aaPredicted RBP18.53■□□□□ 0.56
SHMT2-232ENST00000557487 GSDMAQ96QA5 445 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 ARAP2Q8WZ64 1704 aa18.52■□□□□ 0.56
SHMT2-232ENST00000557487 PNPLA7Q6ZV29 1317 aa18.52■□□□□ 0.56
SHMT2-232ENST00000557487 MAP2K7O14733 419 aa18.52■□□□□ 0.56
SHMT2-232ENST00000557487 STARD3NLO95772 234 aa18.52■□□□□ 0.56
SHMT2-232ENST00000557487 HNRNPH2P55795 449 aaKnown RBP18.52■□□□□ 0.56
SHMT2-232ENST00000557487 RASGRP2Q7LDG7 609 aa18.52■□□□□ 0.56
SHMT2-232ENST00000557487 MSANTD4Q8NCY6 345 aa18.52■□□□□ 0.56
SHMT2-232ENST00000557487 FERMT2Q96AC1 680 aa18.52■□□□□ 0.56
SHMT2-232ENST00000557487 PYM1Q9BRP8 204 aaKnown RBP18.52■□□□□ 0.56
SHMT2-232ENST00000557487 GBP3Q9H0R5 595 aa18.52■□□□□ 0.56
SHMT2-232ENST00000557487 RAB21Q9UL25 225 aa18.52■□□□□ 0.56
SHMT2-232ENST00000557487 POLR3GO15318 223 aaPredicted RBP18.51■□□□□ 0.55
SHMT2-232ENST00000557487 LONRF2Q1L5Z9 754 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 CDKAL1Q5VV42 579 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 SH3RF1Q7Z6J0 888 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 RNF26Q9BY78 433 aaPredicted RBP18.51■□□□□ 0.55
SHMT2-232ENST00000557487 SAMSN1Q9NSI8 373 aaKnown RBP18.51■□□□□ 0.55
SHMT2-232ENST00000557487 CWC15Q9P013 229 aaKnown RBP18.51■□□□□ 0.55
SHMT2-232ENST00000557487 WWC3Q9ULE0 1092 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 IQSEC3Q9UPP2 1182 aaPredicted RBP18.51■□□□□ 0.55
SHMT2-232ENST00000557487 LRP5O75197 1615 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 SYNRGQ9UMZ2 1314 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 CHD4Q14839 1912 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 EIF3JO75822 258 aaKnown RBP18.51■□□□□ 0.55
SHMT2-232ENST00000557487 TRIM14Q14142 442 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 APTXQ7Z2E3 356 aaKnown RBP18.51■□□□□ 0.55
SHMT2-232ENST00000557487 NLRP10Q86W26 655 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 IGSF22Q8N9C0 903 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 NKX2-3Q8TAU0 364 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 MYL10Q9BUA6 226 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 GREM2Q9H772 168 aa18.51■□□□□ 0.55
SHMT2-232ENST00000557487 MRPL44Q9H9J2 332 aaKnown RBP18.51■□□□□ 0.55
SHMT2-232ENST00000557487 EPB41L4AQ9HCS5 686 aaPredicted RBP18.51■□□□□ 0.55
SHMT2-232ENST00000557487 ADD3Q9UEY8 706 aaKnown RBP18.51■□□□□ 0.55
SHMT2-232ENST00000557487 TRIM75PA6NK02 468 aa18.5■□□□□ 0.55
SHMT2-232ENST00000557487 FGFR2P21802 821 aa18.5■□□□□ 0.55
SHMT2-232ENST00000557487 CUL4BQ13620 913 aa18.5■□□□□ 0.55
SHMT2-232ENST00000557487 HDXQ7Z353 690 aa18.5■□□□□ 0.55
SHMT2-232ENST00000557487 TMTC1Q8IUR5 882 aa18.5■□□□□ 0.55
SHMT2-232ENST00000557487 TRMT44Q8IYL2 757 aaKnown RBP18.5■□□□□ 0.55
SHMT2-232ENST00000557487 MED15Q96RN5 788 aa18.5■□□□□ 0.55
SHMT2-232ENST00000557487 PCDHB6Q9Y5E3 794 aa18.5■□□□□ 0.55
SHMT2-232ENST00000557487 RTL9Q8NET4 1388 aa18.5■□□□□ 0.55
SHMT2-232ENST00000557487 DOCK2Q92608 1830 aa18.5■□□□□ 0.55
SHMT2-232ENST00000557487 PDE8AO60658 829 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 MFAP3LO75121 409 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 SLC5A1P13866 664 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 PHKA1P46020 1223 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 SPAG1Q07617 926 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 WHAMMP3Q1A5X7 153 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 SPECC1Q5M775 1068 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 SPATA5Q8NB90 893 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 CCDC85AQ96PX6 553 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-232ENST00000557487 CSRNP2Q9H175 543 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 MYH3P11055 1940 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 CTAGE9A4FU28 777 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 MBD4O95243 580 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 GUCY1A2P33402 732 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 IRX5P78411 483 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-232ENST00000557487 KARSQ15046 597 aaKnown RBP18.49■□□□□ 0.55
SHMT2-232ENST00000557487 FANCBQ8NB91 859 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 DESI2Q9BSY9 194 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 TMOD3Q9NYL9 352 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 KCNJ14Q9UNX9 436 aa18.49■□□□□ 0.55
SHMT2-232ENST00000557487 GSG1L2A8MUP6 293 aa18.48■□□□□ 0.55
SHMT2-232ENST00000557487 GRIN1Q05586 938 aa18.48■□□□□ 0.55
SHMT2-232ENST00000557487 RBL2Q08999 1139 aa18.48■□□□□ 0.55
SHMT2-232ENST00000557487 PODXL2Q9NZ53 605 aa18.48■□□□□ 0.55
SHMT2-232ENST00000557487 SOWAHDA6NJG2 315 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 IRS4O14654 1257 aaPredicted RBP18.47■□□□□ 0.55
SHMT2-232ENST00000557487 AKAP17AQ02040 695 aaKnown RBP18.47■□□□□ 0.55
SHMT2-232ENST00000557487 CTDSPL2Q05D32 466 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 ZNF827Q17R98 1081 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 RAD9BQ6WBX8 426 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 IQUBQ8NA54 791 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 GOLGA5Q8TBA6 731 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 ANKRD36CQ5JPF3 1778 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 HSP90AA4PQ58FG1 418 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 ZNF654Q8IZM8 581 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 MAGEB6Q8N7X4 407 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 ANKRD20A12PQ8NF67 263 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 PAGE5Q96GU1 130 aa18.47■□□□□ 0.55
SHMT2-232ENST00000557487 SHANK3Q9BYB0 1731 aa18.46■□□□□ 0.55
SHMT2-232ENST00000557487 LRRC10BA6NIK2 292 aa18.46■□□□□ 0.55
SHMT2-232ENST00000557487 KRT2P35908 639 aa18.46■□□□□ 0.55
SHMT2-232ENST00000557487 TDO2P48775 406 aa18.46■□□□□ 0.55
SHMT2-232ENST00000557487 DPYDQ12882 1025 aa18.46■□□□□ 0.55
SHMT2-232ENST00000557487 PTPN21Q16825 1174 aa18.46■□□□□ 0.55
SHMT2-232ENST00000557487 BEND6Q5SZJ8 279 aaPredicted RBP18.46■□□□□ 0.55
SHMT2-232ENST00000557487 EPC1Q9H2F5 836 aa18.46■□□□□ 0.55
SHMT2-232ENST00000557487 ACBD3Q9H3P7 528 aa18.46■□□□□ 0.55
SHMT2-232ENST00000557487 BRMS1Q9HCU9 246 aa18.46■□□□□ 0.55
SHMT2-232ENST00000557487 CABP5Q9NP86 173 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms