RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 FLRT1Q9NZU1 646 aa11.52□□□□□ -0.57
SYNE2-224ENST00000557024 DDX20Q9UHI6 824 aaKnown RBP11.52□□□□□ -0.57
SYNE2-224ENST00000557024 DNM1LO00429 736 aa11.51□□□□□ -0.57
SYNE2-224ENST00000557024 SMAD3P84022 425 aaKnown RBP11.51□□□□□ -0.57
SYNE2-224ENST00000557024 MAP2K5Q13163 448 aa11.51□□□□□ -0.57
SYNE2-224ENST00000557024 ERICH6Q7L0X2 663 aa11.51□□□□□ -0.57
SYNE2-224ENST00000557024 MRPL50Q8N5N7 158 aaKnown RBP11.51□□□□□ -0.57
SYNE2-224ENST00000557024 LPAR1Q92633 364 aa11.51□□□□□ -0.57
SYNE2-224ENST00000557024 BADQ92934 168 aa11.51□□□□□ -0.57
SYNE2-224ENST00000557024 HERC5Q9UII4 1024 aaKnown RBP11.51□□□□□ -0.57
SYNE2-224ENST00000557024 PA2G4Q9UQ80 394 aaKnown RBP11.51□□□□□ -0.57
SYNE2-224ENST00000557024 PDS5AQ29RF7 1337 aaKnown RBP11.51□□□□□ -0.57
SYNE2-224ENST00000557024 MYH13Q9UKX3 1938 aa11.5□□□□□ -0.57
SYNE2-224ENST00000557024 TNFRSF10AO00220 468 aa11.5□□□□□ -0.57
SYNE2-224ENST00000557024 ASNSP08243 561 aa11.5□□□□□ -0.57
SYNE2-224ENST00000557024 IL15P40933 162 aaPredicted RBP11.5□□□□□ -0.57
SYNE2-224ENST00000557024 TIMM10P62072 90 aa11.5□□□□□ -0.57
SYNE2-224ENST00000557024 TJAP1Q5JTD0 557 aa11.5□□□□□ -0.57
SYNE2-224ENST00000557024 GJC2Q5T442 439 aaPredicted RBP11.5□□□□□ -0.57
SYNE2-224ENST00000557024 WDR78Q5VTH9 848 aa11.5□□□□□ -0.57
SYNE2-224ENST00000557024 USP38Q8NB14 1042 aa11.5□□□□□ -0.57
SYNE2-224ENST00000557024 KCNV2Q8TDN2 545 aa11.5□□□□□ -0.57
SYNE2-224ENST00000557024 EDC3Q96F86 508 aaKnown RBP11.5□□□□□ -0.57
SYNE2-224ENST00000557024 PTPRCP08575 1304 aa11.5□□□□□ -0.57
SYNE2-224ENST00000557024 CDH23Q9H251 3354 aa11.5□□□□□ -0.57
SYNE2-224ENST00000557024 MAST2Q6P0Q8 1798 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 C19orf81C9J6K1 198 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 USP17L10C9JJH3 530 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 MSCO60682 206 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 GDF11O95390 407 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 CYP2C19P33261 490 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 GSTO1P78417 241 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 ATP2B2Q01814 1243 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 TRIM60Q495X7 471 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 ASTLQ6HA08 431 aaPredicted RBP11.49□□□□□ -0.57
SYNE2-224ENST00000557024 PI16Q6UXB8 463 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 TBC1D9Q6ZT07 1266 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 TEX11Q8IYF3 940 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 TRPV1Q8NER1 839 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 PI4KBQ9UBF8 816 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 MUC3AQ02505 3323 aa11.49□□□□□ -0.57
SYNE2-224ENST00000557024 MYH2Q9UKX2 1941 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 ATMINO43313 823 aaPredicted RBP11.48□□□□□ -0.57
SYNE2-224ENST00000557024 CNMDO75829 334 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 GLRX3O76003 335 aaKnown RBP11.48□□□□□ -0.57
SYNE2-224ENST00000557024 MAP4K4O95819 1239 aaPredicted RBP11.48□□□□□ -0.57
SYNE2-224ENST00000557024 LDHCP07864 332 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 ANO1Q5XXA6 986 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 SLC39A5Q6ZMH5 540 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 SH3RF1Q7Z6J0 888 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 SH3RF3Q8TEJ3 882 aaPredicted RBP11.48□□□□□ -0.57
SYNE2-224ENST00000557024 GTF3C2Q8WUA4 911 aaPredicted RBP11.48□□□□□ -0.57
SYNE2-224ENST00000557024 NSUN4Q96CB9 384 aaKnown RBP11.48□□□□□ -0.57
SYNE2-224ENST00000557024 DNAJC18Q9H819 358 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 PDLIM7Q9NR12 457 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 EMILIN3Q9NT22 766 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 RAI14Q9P0K7 980 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 ZBTB21Q9ULJ3 1066 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 RABGAP1Q9Y3P9 1069 aa11.48□□□□□ -0.57
SYNE2-224ENST00000557024 A0A1B0GUL7 405 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 TRIM43BA6NCK2 446 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 SLC15A5A6NIM6 579 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 KBTBD13C9JR72 458 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 UBTFL1P0CB47 393 aaPredicted RBP11.47□□□□□ -0.57
SYNE2-224ENST00000557024 PTPREP23469 700 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 CCNA1P78396 465 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 MVPQ14764 893 aaKnown RBP11.47□□□□□ -0.57
SYNE2-224ENST00000557024 GRIN2CQ14957 1233 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 ZYXQ15942 572 aaKnown RBP11.47□□□□□ -0.57
SYNE2-224ENST00000557024 USP17L2Q6R6M4 530 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 CRACR2BQ8N4Y2 399 aaPredicted RBP11.47□□□□□ -0.57
SYNE2-224ENST00000557024 ARRDC4Q8NCT1 418 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 NPLOC4Q8TAT6 608 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 TRIM43Q96BQ3 446 aaPredicted RBP11.47□□□□□ -0.57
SYNE2-224ENST00000557024 XAGE2Q96GT9 111 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 RNPC3Q96LT9 517 aaKnown RBP11.47□□□□□ -0.57
SYNE2-224ENST00000557024 DHX36Q9H2U1 1008 aaKnown RBP11.47□□□□□ -0.57
SYNE2-224ENST00000557024 HMG20BQ9P0W2 317 aa11.47□□□□□ -0.57
SYNE2-224ENST00000557024 TMEM265A0A087WTH1 108 aa11.46□□□□□ -0.57
SYNE2-224ENST00000557024 HOXC6P09630 235 aa11.46□□□□□ -0.57
SYNE2-224ENST00000557024 CYBAP13498 195 aa11.46□□□□□ -0.57
SYNE2-224ENST00000557024 EPHB4P54760 987 aa11.46□□□□□ -0.57
SYNE2-224ENST00000557024 MAPKAPK5Q8IW41 473 aa11.46□□□□□ -0.57
SYNE2-224ENST00000557024 SPATA5Q8NB90 893 aa11.46□□□□□ -0.57
SYNE2-224ENST00000557024 SSH1Q8WYL5 1049 aa11.46□□□□□ -0.57
SYNE2-224ENST00000557024 FERMT2Q96AC1 680 aa11.46□□□□□ -0.57
SYNE2-224ENST00000557024 TRIM34Q9BYJ4 488 aa11.46□□□□□ -0.57
SYNE2-224ENST00000557024 IVNS1ABPQ9Y6Y0 642 aa11.46□□□□□ -0.57
SYNE2-224ENST00000557024 LTBP2Q14767 1821 aa11.46□□□□□ -0.58
SYNE2-224ENST00000557024 USP17L15C9J2P7 530 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 USP17L13C9JLJ4 530 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 USP17L11C9JVI0 530 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 USP17L18D6R9N7 530 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 USP17L22D6RA61 530 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 USP17L17D6RBQ6 530 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 USP17L19D6RCP7 530 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 USP17L20D6RJB6 530 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 ITGB8P26012 769 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 PLA2G5P39877 138 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 ADCYAP1R1P41586 468 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms