RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 MRPL58Q14197 206 aaKnown RBP8.91□□□□□ -0.98
PRPF39-209ENST00000556353 REC114Q7Z4M0 266 aa8.91□□□□□ -0.98
PRPF39-209ENST00000556353 KRTAP19-1Q8IUB9 90 aa8.91□□□□□ -0.98
PRPF39-209ENST00000556353 UBE2FQ969M7 185 aa8.91□□□□□ -0.98
PRPF39-209ENST00000556353 COPRSQ9NQ92 184 aa8.91□□□□□ -0.98
PRPF39-209ENST00000556353 ZSWIM5Q9P217 1185 aa8.91□□□□□ -0.98
PRPF39-209ENST00000556353 REV1Q9UBZ9 1251 aa8.91□□□□□ -0.98
PRPF39-209ENST00000556353 POLR3KQ9Y2Y1 108 aaPredicted RBP8.91□□□□□ -0.98
PRPF39-209ENST00000556353 CARMIL2Q6F5E8 1435 aa8.9□□□□□ -0.98
PRPF39-209ENST00000556353 HTR3BO95264 441 aa8.9□□□□□ -0.98
PRPF39-209ENST00000556353 GARTP22102 1010 aa8.9□□□□□ -0.98
PRPF39-209ENST00000556353 FAM196AQ6ZSG2 479 aa8.9□□□□□ -0.98
PRPF39-209ENST00000556353 SLFN12Q8IYM2 578 aa8.9□□□□□ -0.98
PRPF39-209ENST00000556353 PPP1R13LQ8WUF5 828 aa8.9□□□□□ -0.98
PRPF39-209ENST00000556353 KLHL3Q9UH77 587 aa8.9□□□□□ -0.98
PRPF39-209ENST00000556353 EIF4A3P38919 411 aaKnown RBP8.89□□□□□ -0.99
PRPF39-209ENST00000556353 CWF19L2Q2TBE0 894 aaKnown RBP8.89□□□□□ -0.99
PRPF39-209ENST00000556353 HS2ST1Q7LGA3 356 aa8.89□□□□□ -0.99
PRPF39-209ENST00000556353 FBXO27Q8NI29 283 aa8.89□□□□□ -0.99
PRPF39-209ENST00000556353 Q96M66 194 aa8.89□□□□□ -0.99
PRPF39-209ENST00000556353 GGT7Q9UJ14 662 aa8.89□□□□□ -0.99
PRPF39-209ENST00000556353 CTNND2Q9UQB3 1225 aa8.89□□□□□ -0.99
PRPF39-209ENST00000556353 SUPT16HQ9Y5B9 1047 aaKnown RBP8.89□□□□□ -0.99
PRPF39-209ENST00000556353 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.89□□□□□ -0.99
PRPF39-209ENST00000556353 TLR3O15455 904 aaKnown RBP8.88□□□□□ -0.99
PRPF39-209ENST00000556353 YBX3P16989 372 aaKnown RBP eCLIP8.88□□□□□ -0.99
PRPF39-209ENST00000556353 TNNI2P48788 182 aa8.88□□□□□ -0.99
PRPF39-209ENST00000556353 FBXL19Q6PCT2 694 aa8.88□□□□□ -0.99
PRPF39-209ENST00000556353 POU5F2Q8N7G0 328 aa8.88□□□□□ -0.99
PRPF39-209ENST00000556353 ROBO2Q9HCK4 1378 aa8.87□□□□□ -0.99
PRPF39-209ENST00000556353 RBAK-RBAKDNI3L0D1 243 aa8.87□□□□□ -0.99
PRPF39-209ENST00000556353 AFMP43652 599 aa8.87□□□□□ -0.99
PRPF39-209ENST00000556353 MLECQ14165 292 aa8.87□□□□□ -0.99
PRPF39-209ENST00000556353 LCE3BQ5TA77 95 aa8.87□□□□□ -0.99
PRPF39-209ENST00000556353 TMPRSS7Q7RTY8 843 aa8.87□□□□□ -0.99
PRPF39-209ENST00000556353 TMEM40Q8WWA1 233 aa8.87□□□□□ -0.99
PRPF39-209ENST00000556353 TRIT1Q9H3H1 467 aaKnown RBP8.87□□□□□ -0.99
PRPF39-209ENST00000556353 KCNQ5Q9NR82 932 aa8.87□□□□□ -0.99
PRPF39-209ENST00000556353 KCNH3Q9ULD8 1083 aa8.87□□□□□ -0.99
PRPF39-209ENST00000556353 CHURC1-FNTBB4DL54 471 aa8.86□□□□□ -0.99
PRPF39-209ENST00000556353 ZSWIM9Q86XI8 627 aa8.86□□□□□ -0.99
PRPF39-209ENST00000556353 RNF141Q8WVD5 230 aa8.86□□□□□ -0.99
PRPF39-209ENST00000556353 CCDC120Q96HB5 630 aa8.86□□□□□ -0.99
PRPF39-209ENST00000556353 CCDC74BQ96LY2 380 aa8.86□□□□□ -0.99
PRPF39-209ENST00000556353 ALPK1Q96QP1 1244 aa8.86□□□□□ -0.99
PRPF39-209ENST00000556353 LRRC3Q9BY71 257 aa8.86□□□□□ -0.99
PRPF39-209ENST00000556353 GPATCH2Q9NW75 528 aa8.86□□□□□ -0.99
PRPF39-209ENST00000556353 GREM1O60565 184 aa8.85□□□□□ -0.99
PRPF39-209ENST00000556353 ZNF16P17020 682 aaPredicted RBP8.85□□□□□ -0.99
PRPF39-209ENST00000556353 GDNFP39905 211 aa8.85□□□□□ -0.99
PRPF39-209ENST00000556353 KCNMB1Q16558 191 aa8.85□□□□□ -0.99
PRPF39-209ENST00000556353 KRTAP1-3Q8IUG1 177 aa8.85□□□□□ -0.99
PRPF39-209ENST00000556353 PHACTR4Q8IZ21 702 aa8.85□□□□□ -0.99
PRPF39-209ENST00000556353 DTWD2Q8NBA8 298 aa8.85□□□□□ -0.99
PRPF39-209ENST00000556353 ZNF296Q8WUU4 475 aaPredicted RBP8.85□□□□□ -0.99
PRPF39-209ENST00000556353 DUSP15Q9H1R2 295 aaPredicted RBP8.85□□□□□ -0.99
PRPF39-209ENST00000556353 TPP2P29144 1249 aaPredicted RBP8.84□□□□□ -0.99
PRPF39-209ENST00000556353 BAHD1Q8TBE0 780 aaPredicted RBP8.84□□□□□ -0.99
PRPF39-209ENST00000556353 BRMS1Q9HCU9 246 aa8.84□□□□□ -0.99
PRPF39-209ENST00000556353 DNAJA2O60884 412 aa8.83□□□□□ -1
PRPF39-209ENST00000556353 ESR1P03372 595 aa8.83□□□□□ -1
PRPF39-209ENST00000556353 CHMP4BP1P59074 171 aa8.83□□□□□ -1
PRPF39-209ENST00000556353 CREG2Q8IUH2 290 aa8.83□□□□□ -1
PRPF39-209ENST00000556353 KREMEN1Q96MU8 473 aa8.83□□□□□ -1
PRPF39-209ENST00000556353 KIF2CQ99661 725 aa8.83□□□□□ -1
PRPF39-209ENST00000556353 GPR62Q9BZJ7 368 aa8.83□□□□□ -1
PRPF39-209ENST00000556353 SLAMF8Q9P0V8 285 aa8.83□□□□□ -1
PRPF39-209ENST00000556353 PCDHB14Q9Y5E9 798 aa8.83□□□□□ -1
PRPF39-209ENST00000556353 GBP1P32455 592 aa8.82□□□□□ -1
PRPF39-209ENST00000556353 TMEM87AQ8NBN3 555 aa8.82□□□□□ -1
PRPF39-209ENST00000556353 KIRREL1Q96J84 757 aa8.82□□□□□ -1
PRPF39-209ENST00000556353 ASPNQ9BXN1 380 aa8.82□□□□□ -1
PRPF39-209ENST00000556353 C19orf73Q9NVV2 129 aa8.82□□□□□ -1
PRPF39-209ENST00000556353 ADAMTS1Q9UHI8 967 aa8.82□□□□□ -1
PRPF39-209ENST00000556353 WASH4PA8MWX3 477 aa8.81□□□□□ -1
PRPF39-209ENST00000556353 LRRN2O75325 713 aa8.81□□□□□ -1
PRPF39-209ENST00000556353 ATE1O95260 518 aa8.81□□□□□ -1
PRPF39-209ENST00000556353 SRFP11831 508 aa8.81□□□□□ -1
PRPF39-209ENST00000556353 MFAP1P55081 439 aaKnown RBP8.81□□□□□ -1
PRPF39-209ENST00000556353 GAB4Q2WGN9 574 aa8.81□□□□□ -1
PRPF39-209ENST00000556353 FYB2Q5VWT5 728 aa8.81□□□□□ -1
PRPF39-209ENST00000556353 TSPYL5Q86VY4 417 aaPredicted RBP8.81□□□□□ -1
PRPF39-209ENST00000556353 FAM53CQ9NYF3 392 aa8.81□□□□□ -1
PRPF39-209ENST00000556353 DUSP13Q9UII6 198 aa8.81□□□□□ -1
PRPF39-209ENST00000556353 SLC22A31A6NKX4 558 aa8.8□□□□□ -1
PRPF39-209ENST00000556353 FARP2O94887 1054 aaPredicted RBP8.8□□□□□ -1
PRPF39-209ENST00000556353 C8AP07357 584 aa8.8□□□□□ -1
PRPF39-209ENST00000556353 RAG1P15918 1043 aa8.8□□□□□ -1
PRPF39-209ENST00000556353 CRKP46108 304 aa8.8□□□□□ -1
PRPF39-209ENST00000556353 APOBRQ0VD83 1088 aa8.8□□□□□ -1
PRPF39-209ENST00000556353 SEZ6Q53EL9 994 aa8.8□□□□□ -1
PRPF39-209ENST00000556353 ARSHQ5FYA8 562 aa8.8□□□□□ -1
PRPF39-209ENST00000556353 TTC6Q86TZ1 520 aa8.8□□□□□ -1
PRPF39-209ENST00000556353 UBP1Q9NZI7 540 aa8.8□□□□□ -1
PRPF39-209ENST00000556353 GMIPQ9P107 970 aa8.8□□□□□ -1
PRPF39-209ENST00000556353 TMEM59LQ9UK28 342 aa8.8□□□□□ -1
PRPF39-209ENST00000556353 ZNF503-AS2A6NEH8 195 aa8.79□□□□□ -1
PRPF39-209ENST00000556353 LRRC10BA6NIK2 292 aa8.79□□□□□ -1
PRPF39-209ENST00000556353 RGS13O14921 159 aa8.79□□□□□ -1
PRPF39-209ENST00000556353 GLI1P08151 1106 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms