RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 CDK8P49336 464 aa24.67■■□□□ 1.54
CCDC88C-210ENST00000555995 FAM110CQ1W6H9 321 aa24.67■■□□□ 1.54
CCDC88C-210ENST00000555995 SHROOM1Q2M3G4 852 aaPredicted RBP24.67■■□□□ 1.54
CCDC88C-210ENST00000555995 PLEKHM2Q8IWE5 1019 aa24.67■■□□□ 1.54
CCDC88C-210ENST00000555995 DYNLL2Q96FJ2 89 aa24.67■■□□□ 1.54
CCDC88C-210ENST00000555995 HELLSQ9NRZ9 838 aa24.67■■□□□ 1.54
CCDC88C-210ENST00000555995 FCGRTP55899 365 aa24.66■■□□□ 1.54
CCDC88C-210ENST00000555995 SEPT2Q15019 361 aa24.66■■□□□ 1.54
CCDC88C-210ENST00000555995 SLC44A5Q8NCS7 719 aa24.66■■□□□ 1.54
CCDC88C-210ENST00000555995 ASCC2Q9H1I8 757 aaPredicted RBP24.66■■□□□ 1.54
CCDC88C-210ENST00000555995 ARHGEF10LQ9HCE6 1279 aa24.66■■□□□ 1.54
CCDC88C-210ENST00000555995 SLC3A2P08195 630 aaKnown RBP24.65■■□□□ 1.54
CCDC88C-210ENST00000555995 PSMC4P43686 418 aa24.65■■□□□ 1.54
CCDC88C-210ENST00000555995 IFNL3Q8IZI9 196 aa24.65■■□□□ 1.54
CCDC88C-210ENST00000555995 NAPBQ9H115 298 aa24.65■■□□□ 1.54
CCDC88C-210ENST00000555995 ZSWIM8A7E2V4 1837 aa24.64■■□□□ 1.54
CCDC88C-210ENST00000555995 CYP2D7A0A087X1C5 515 aa24.64■■□□□ 1.54
CCDC88C-210ENST00000555995 FMNL1O95466 1100 aaPredicted RBP24.64■■□□□ 1.54
CCDC88C-210ENST00000555995 MFAP1P55081 439 aaKnown RBP24.64■■□□□ 1.54
CCDC88C-210ENST00000555995 EVX2Q03828 476 aa24.64■■□□□ 1.54
CCDC88C-210ENST00000555995 RILPL2Q969X0 211 aa24.64■■□□□ 1.54
CCDC88C-210ENST00000555995 MKNK2Q9HBH9 465 aa24.64■■□□□ 1.54
CCDC88C-210ENST00000555995 EPB41L4AQ9HCS5 686 aaPredicted RBP24.64■■□□□ 1.54
CCDC88C-210ENST00000555995 MINDY4BA8MYZ0 360 aa24.63■■□□□ 1.53
CCDC88C-210ENST00000555995 HIP1O00291 1037 aa24.63■■□□□ 1.53
CCDC88C-210ENST00000555995 GUCY1A2P33402 732 aa24.63■■□□□ 1.53
CCDC88C-210ENST00000555995 ICA1Q05084 483 aa24.63■■□□□ 1.53
CCDC88C-210ENST00000555995 SEC62Q99442 399 aaKnown RBP24.63■■□□□ 1.53
CCDC88C-210ENST00000555995 EMILIN3Q9NT22 766 aa24.63■■□□□ 1.53
CCDC88C-210ENST00000555995 USP17L15C9J2P7 530 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 USP17L13C9JLJ4 530 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 USP17L11C9JVI0 530 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 USP17L18D6R9N7 530 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 USP17L22D6RA61 530 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 USP17L17D6RBQ6 530 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 USP17L19D6RCP7 530 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 USP17L20D6RJB6 530 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 AKR1B1P15121 316 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 USP17L24Q0WX57 530 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 ZYXQ15942 572 aaKnown RBP24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 MCMDC2Q4G0Z9 681 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 NBPF11Q86T75 865 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 ANKRD13CQ8N6S4 541 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 ARHGAP39Q9C0H5 1083 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 KANSL2Q9H9L4 492 aa24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 GREB1LQ9C091 1923 aaPredicted RBP24.62■■□□□ 1.53
CCDC88C-210ENST00000555995 PDE4BQ07343 736 aa24.61■■□□□ 1.53
CCDC88C-210ENST00000555995 LPAR1Q92633 364 aa24.61■■□□□ 1.53
CCDC88C-210ENST00000555995 TRIM47Q96LD4 638 aa24.61■■□□□ 1.53
CCDC88C-210ENST00000555995 MORF4L1Q9UBU8 362 aa24.61■■□□□ 1.53
CCDC88C-210ENST00000555995 SRRDQ9UH36 339 aa24.61■■□□□ 1.53
CCDC88C-210ENST00000555995 VCAM1P19320 739 aa24.6■■□□□ 1.53
CCDC88C-210ENST00000555995 HERVK_113P62684 666 aa24.6■■□□□ 1.53
CCDC88C-210ENST00000555995 SLC9C1Q4G0N8 1177 aa24.6■■□□□ 1.53
CCDC88C-210ENST00000555995 ACER1Q8TDN7 264 aa24.6■■□□□ 1.53
CCDC88C-210ENST00000555995 TNPO2O14787 897 aaKnown RBP24.59■■□□□ 1.53
CCDC88C-210ENST00000555995 ARMC5Q96C12 935 aa24.59■■□□□ 1.53
CCDC88C-210ENST00000555995 PTCH2Q9Y6C5 1203 aa24.59■■□□□ 1.53
CCDC88C-210ENST00000555995 MYPNQ86TC9 1320 aa24.59■■□□□ 1.53
CCDC88C-210ENST00000555995 RBBP6Q7Z6E9 1792 aaKnown RBP24.58■■□□□ 1.53
CCDC88C-210ENST00000555995 CAP1Q01518 475 aa24.58■■□□□ 1.53
CCDC88C-210ENST00000555995 ZNF444Q8N0Y2 327 aaPredicted RBP24.58■■□□□ 1.53
CCDC88C-210ENST00000555995 RAET1EQ8TD07 263 aa24.58■■□□□ 1.53
CCDC88C-210ENST00000555995 COA7Q96BR5 231 aa24.58■■□□□ 1.53
CCDC88C-210ENST00000555995 DIAPH3Q9NSV4 1193 aa24.58■■□□□ 1.53
CCDC88C-210ENST00000555995 TMX2Q9Y320 296 aa24.58■■□□□ 1.53
CCDC88C-210ENST00000555995 ZMYM6O95789 1325 aa24.58■■□□□ 1.52
CCDC88C-210ENST00000555995 RASA1P20936 1047 aa24.57■■□□□ 1.52
CCDC88C-210ENST00000555995 PPARAQ07869 468 aa24.57■■□□□ 1.52
CCDC88C-210ENST00000555995 ALX1Q15699 326 aa24.57■■□□□ 1.52
CCDC88C-210ENST00000555995 PPP4R3BQ5MIZ7 849 aa24.57■■□□□ 1.52
CCDC88C-210ENST00000555995 P2RX7Q99572 595 aaKnown RBP24.57■■□□□ 1.52
CCDC88C-210ENST00000555995 CCDC171Q6TFL3 1326 aa24.57■■□□□ 1.52
CCDC88C-210ENST00000555995 A0A0D9SFI3 127 aa24.56■■□□□ 1.52
CCDC88C-210ENST00000555995 SDSP20132 328 aa24.56■■□□□ 1.52
CCDC88C-210ENST00000555995 NMIQ13287 307 aaPredicted RBP24.56■■□□□ 1.52
CCDC88C-210ENST00000555995 CATSPERGQ6ZRH7 1159 aa24.56■■□□□ 1.52
CCDC88C-210ENST00000555995 CCDC129Q6ZRS4 1044 aa24.56■■□□□ 1.52
CCDC88C-210ENST00000555995 GPRC5AQ8NFJ5 357 aa24.56■■□□□ 1.52
CCDC88C-210ENST00000555995 RPAP3Q9H6T3 665 aaPredicted RBP24.56■■□□□ 1.52
CCDC88C-210ENST00000555995 VCPKMTQ9H867 229 aa24.56■■□□□ 1.52
CCDC88C-210ENST00000555995 GOPCQ9HD26 462 aa24.56■■□□□ 1.52
CCDC88C-210ENST00000555995 PLIN4Q96Q06 1357 aa24.55■■□□□ 1.52
CCDC88C-210ENST00000555995 A0A1W2PRG0 241 aa24.55■■□□□ 1.52
CCDC88C-210ENST00000555995 SMIM22K7EJ46 135 aa24.55■■□□□ 1.52
CCDC88C-210ENST00000555995 CTGFP29279 349 aa24.55■■□□□ 1.52
CCDC88C-210ENST00000555995 LBX2Q6XYB7 198 aa24.55■■□□□ 1.52
CCDC88C-210ENST00000555995 FAM227BQ96M60 508 aa24.55■■□□□ 1.52
CCDC88C-210ENST00000555995 RABGAP1Q9Y3P9 1069 aa24.55■■□□□ 1.52
CCDC88C-210ENST00000555995 MYH4Q9Y623 1939 aa24.55■■□□□ 1.52
CCDC88C-210ENST00000555995 WDR46O15213 610 aaKnown RBP24.54■■□□□ 1.52
CCDC88C-210ENST00000555995 RGS19P49795 217 aa24.54■■□□□ 1.52
CCDC88C-210ENST00000555995 CCNA1P78396 465 aa24.54■■□□□ 1.52
CCDC88C-210ENST00000555995 TANGO6Q9C0B7 1094 aa24.54■■□□□ 1.52
CCDC88C-210ENST00000555995 NYAP2Q9P242 653 aa24.54■■□□□ 1.52
CCDC88C-210ENST00000555995 SYNPO2Q9UMS6 1093 aa24.54■■□□□ 1.52
CCDC88C-210ENST00000555995 EEF2P13639 858 aaKnown RBP24.53■■□□□ 1.52
CCDC88C-210ENST00000555995 MAPK4P31152 587 aa24.53■■□□□ 1.52
CCDC88C-210ENST00000555995 ERVK-9P63128 1117 aa24.53■■□□□ 1.52
CCDC88C-210ENST00000555995 ERVK-24P63145 666 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms