RNA–Protein interactions for RNA: ENST00000555232.5

ARHGEF40-206, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 2

Gene ARHGEF40, Length 3,902 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-206ENST00000555232 ZMYM6O95789 1325 aa13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 ERICH4A6NGS2 130 aa13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 KIF23Q02241 960 aaPredicted RBP13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 ST3GAL1Q11201 340 aa13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 GRAPQ13588 217 aa13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 TTC38Q5R3I4 469 aa13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 LRP10Q7Z4F1 713 aa13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 MB21D2Q8IYB1 491 aaPredicted RBP13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 GRAPLQ8TC17 118 aaPredicted RBP13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 RRP36Q96EU6 259 aaKnown RBP13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 URI1O94763 535 aaPredicted RBP13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 SLC1A4P43007 532 aa13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 LONRF3Q496Y0 759 aa13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 ZNF710Q8N1W2 664 aa13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 NUP88Q99567 741 aaPredicted RBP13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 VPS16Q9H269 839 aa13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 CD209Q9NNX6 404 aa13.9□□□□□ -0.18
ARHGEF40-206ENST00000555232 CTDNEP1O95476 244 aa13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 TCERG1LQ5VWI1 586 aa13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 EPSTI1Q96J88 318 aa13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 DCP1AQ9NPI6 582 aaPredicted RBP13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 RPAP1Q9BWH6 1393 aaPredicted RBP13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 ARID5AQ03989 594 aa13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 PTPN14Q15678 1187 aa13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 VPS72Q15906 364 aa13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 ENAHQ8N8S7 591 aaPredicted RBP13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 IPO4Q8TEX9 1081 aaKnown RBP13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 TRIM47Q96LD4 638 aa13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 DDX39AO00148 427 aaKnown RBP13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 PTGDRQ13258 359 aa13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 TBC1D10BQ4KMP7 808 aaPredicted RBP13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 JDP2Q8WYK2 163 aa13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 GOLPH3LQ9H4A5 285 aa13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 RTL9Q8NET4 1388 aa13.89□□□□□ -0.19
ARHGEF40-206ENST00000555232 CDHR2Q9BYE9 1310 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 DLG5Q8TDM6 1919 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 FOXN1O15353 648 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 STIM1Q13586 685 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 CCDC174Q6PII3 467 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 DTHD1Q6ZMT9 781 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 NOM1Q5C9Z4 860 aaKnown RBP13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 NLGN1Q8N2Q7 840 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 STAG2Q8N3U4 1231 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 MED23Q9ULK4 1368 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 KARSQ15046 597 aaKnown RBP13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 DEF6Q9H4E7 631 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 BCL2L12Q9HB09 334 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 SEPT11Q9NVA2 429 aaKnown RBP13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 PCDHA5Q9Y5H7 936 aa13.88□□□□□ -0.19
ARHGEF40-206ENST00000555232 SMCO2A6NFE2 343 aa13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 MTIF2P46199 727 aaKnown RBP13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 RILPL1Q5EBL4 403 aa13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 CTR9Q6PD62 1173 aa13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 TEKT1Q969V4 418 aa13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 LY9Q9HBG7 655 aa13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 PLCD1P51178 756 aa13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 CCDC84Q86UT8 332 aaPredicted RBP13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 LINC00301Q8NCQ3 95 aa13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 TDRD3Q9H7E2 651 aaKnown RBP13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 CFBP00751 764 aa13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 MYCNP04198 464 aaPredicted RBP13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 FDPSP14324 419 aaKnown RBP13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 AOC3Q16853 763 aa13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 CSRNP2Q9H175 543 aa13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 ZBTB12Q9Y330 459 aaPredicted RBP13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 USP42Q9H9J4 1324 aaKnown RBP13.87□□□□□ -0.19
ARHGEF40-206ENST00000555232 DDIT3P35638 169 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 TECP42680 631 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 DRC1Q96MC2 740 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 LRRC4BQ9NT99 713 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 NFE2L3Q9Y4A8 694 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 PSDA5PKW4 1024 aaPredicted RBP13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 EXOSC10Q01780 885 aaKnown RBP13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 ADALQ6DHV7 355 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 USP49Q70CQ1 688 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 AMIGO3Q86WK7 504 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 C6orf50Q9HD87 102 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 DACH1Q9UI36 760 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 GRIK5Q16478 980 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 KIFC2Q96AC6 838 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 PDLIM2Q96JY6 352 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 XPO4Q9C0E2 1151 aaKnown RBP13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 KIAA1468Q9P260 1216 aa13.86□□□□□ -0.19
ARHGEF40-206ENST00000555232 ATP1A3P13637 1013 aa13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 PLCG2P16885 1265 aa13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 ATP2B4P23634 1241 aa13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 CACNB1Q02641 598 aaPredicted RBP13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 NSUN4Q96CB9 384 aaKnown RBP13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 PIGSQ96S52 555 aa13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 JCADQ9P266 1359 aa13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 SMARCC2Q8TAQ2 1214 aa13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 CALML4Q96GE6 196 aa13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 LZTFL1Q9NQ48 299 aa13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 ARPP21Q9UBL0 812 aaPredicted RBP13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 EPB41L2O43491 1005 aaKnown RBP13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 TMEM266Q2M3C6 531 aa13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 ZNF408Q9H9D4 720 aa13.85□□□□□ -0.19
ARHGEF40-206ENST00000555232 FANCLQ9NW38 375 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms