RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 LINC00301Q8NCQ3 95 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 STX8Q9UNK0 236 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 YDJCA8MPS7 323 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 DEXIO95424 95 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 PLCG2P16885 1265 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 MARCKSP29966 332 aaPredicted RBP14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 DACT2Q5SW24 774 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 C16orf86Q6ZW13 317 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 PODNQ7Z5L7 613 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 CCAR1Q8IX12 1150 aaKnown RBP14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 RTEL1Q9NZ71 1219 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 ATF5Q9Y2D1 282 aaPredicted RBP14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 CNTNAP5Q8WYK1 1306 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 FAM205CA6NFA0 338 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 MMP1P03956 469 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 KCNA3P22001 575 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 CRKP46108 304 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 STK38Q15208 465 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 TMTC3Q6ZXV5 915 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 BRAPQ7Z569 592 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 DIS3L2Q8IYB7 885 aaKnown RBP14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 CPVLQ9H3G5 476 aa14.76□□□□□ -0.05
VIPAS39-206ENST00000553888 ADAMTS3O15072 1205 aa14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 DDAH1O94760 285 aa14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 RBM5P52756 815 aaKnown RBP eCLIP14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 PNMA1Q8ND90 353 aa14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 TEKT1Q969V4 418 aa14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 NUP62CLQ9H1M0 184 aa14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 KAT14Q9H8E8 782 aa14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 COL4A5P29400 1685 aa14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 PPIP5K2O43314 1243 aa14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 RCAN1P53805 252 aa14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 TCP10Q12799 353 aa14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 SF3A1Q15459 793 aaKnown RBP14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 NOM1Q5C9Z4 860 aaKnown RBP14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 ANO1Q5XXA6 986 aa14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 CTCFLQ8NI51 663 aaPredicted RBP14.75□□□□□ -0.05
VIPAS39-206ENST00000553888 FAM196BA6NMK8 535 aa14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 GOLGA8HP0CJ92 632 aa14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 U2AF2P26368 475 aaKnown RBP eCLIP14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 ERCC4Q92889 916 aaPredicted RBP14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 RNF26Q9BY78 433 aaPredicted RBP14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 A0A1B0GVL5 298 aa14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 ATP2B1P20020 1258 aa14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 SLC35G1Q2M3R5 365 aa14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 EARS2Q5JPH6 523 aaKnown RBP14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 TMEM47Q9BQJ4 181 aa14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 FUCA2Q9BTY2 467 aa14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 ZNF277Q9NRM2 450 aaPredicted RBP14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 SUGT1Q9Y2Z0 365 aa14.74□□□□□ -0.05
VIPAS39-206ENST00000553888 A0A087WWV3 80 aa14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 EIF6P56537 245 aaKnown RBP14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 AKAP17AQ02040 695 aaKnown RBP14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 KIAA2012Q0VF49 1180 aa14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 FSIP1Q8NA03 581 aa14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 WASF1Q92558 559 aa14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 POLR3EQ9NVU0 708 aa14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 SPTLC2O15270 562 aa14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 TOB1P50616 345 aaPredicted RBP14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 SHROOM1Q2M3G4 852 aaPredicted RBP14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 STRIP1Q5VSL9 837 aa14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 TTLL6Q8N841 843 aa14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 CEP95Q96GE4 821 aa14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 TNMDQ9H2S6 317 aa14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 RBM28Q9NW13 759 aaKnown RBP14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 SIPA1L1O43166 1804 aa14.73□□□□□ -0.05
VIPAS39-206ENST00000553888 PRPF3O43395 683 aaKnown RBP14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 CALM1P0DP23 149 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 CALM2P0DP24 149 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 CALM3P0DP25 149 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 SNW1Q13573 536 aaKnown RBP14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 NOSTRINQ8IVI9 506 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 MAP3K14Q99558 947 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 AKR1B1P15121 316 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 ATL3Q6DD88 541 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 HHIPL2Q6UWX4 724 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 DGKHQ86XP1 1220 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 CERS3Q8IU89 383 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 CLSTN2Q9H4D0 955 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 MRVI1Q9Y6F6 885 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 GPKOWQ92917 476 aaPredicted RBP eCLIP14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 CLIC6Q96NY7 704 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 OSBPL5Q9H0X9 879 aaPredicted RBP14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 PPP1R1BQ9UD71 204 aaPredicted RBP14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 MAD2L2Q9UI95 211 aa14.72□□□□□ -0.05
VIPAS39-206ENST00000553888 RAD17O75943 681 aa14.71□□□□□ -0.05
VIPAS39-206ENST00000553888 NDUFA8P51970 172 aa14.71□□□□□ -0.05
VIPAS39-206ENST00000553888 PTPAQ15257 358 aa14.71□□□□□ -0.05
VIPAS39-206ENST00000553888 MAP3K11Q16584 847 aa14.71□□□□□ -0.05
VIPAS39-206ENST00000553888 WNT7AO00755 349 aa14.71□□□□□ -0.06
VIPAS39-206ENST00000553888 YEATS4O95619 227 aa14.71□□□□□ -0.06
VIPAS39-206ENST00000553888 GABPAQ06546 454 aa14.71□□□□□ -0.06
VIPAS39-206ENST00000553888 NEDD1Q8NHV4 660 aa14.71□□□□□ -0.06
VIPAS39-206ENST00000553888 PPP2R5BQ15173 497 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 SAFBQ15424 915 aaKnown RBP eCLIP14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 NPY5RQ15761 445 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 AXDND1Q5T1B0 1012 aaPredicted RBP14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 ENGASEQ8NFI3 743 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 ZDHHC15Q96MV8 337 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms