RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 INCENPQ9NQS7 918 aa16.8■□□□□ 0.28
PTCH1-226ENST00000553011 PDHXO00330 501 aa16.79■□□□□ 0.28
PTCH1-226ENST00000553011 SGSM2O43147 1006 aa16.79■□□□□ 0.28
PTCH1-226ENST00000553011 SLC3A2P08195 630 aaKnown RBP16.79■□□□□ 0.28
PTCH1-226ENST00000553011 HAND2P61296 217 aa16.79■□□□□ 0.28
PTCH1-226ENST00000553011 SH3D19Q5HYK7 790 aa16.79■□□□□ 0.28
PTCH1-226ENST00000553011 TREML2Q5T2D2 321 aa16.79■□□□□ 0.28
PTCH1-226ENST00000553011 FEZ1Q99689 392 aa16.79■□□□□ 0.28
PTCH1-226ENST00000553011 DSCC1Q9BVC3 393 aa16.79■□□□□ 0.28
PTCH1-226ENST00000553011 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.79■□□□□ 0.28
PTCH1-226ENST00000553011 CFHR5Q9BXR6 569 aa16.79■□□□□ 0.28
PTCH1-226ENST00000553011 ANAPC4Q9UJX5 808 aa16.79■□□□□ 0.28
PTCH1-226ENST00000553011 PDE4BQ07343 736 aa16.78■□□□□ 0.28
PTCH1-226ENST00000553011 ZYXQ15942 572 aaKnown RBP16.78■□□□□ 0.28
PTCH1-226ENST00000553011 PROCA1Q8NCQ7 364 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-226ENST00000553011 NBPF3Q9H094 633 aa16.78■□□□□ 0.28
PTCH1-226ENST00000553011 ZNF287Q9HBT7 754 aa16.78■□□□□ 0.28
PTCH1-226ENST00000553011 ZCCHC17Q9NP64 241 aaKnown RBP16.78■□□□□ 0.28
PTCH1-226ENST00000553011 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.78■□□□□ 0.28
PTCH1-226ENST00000553011 A0A1W2PRG0 241 aa16.77■□□□□ 0.28
PTCH1-226ENST00000553011 C19orf81C9J6K1 198 aa16.77■□□□□ 0.28
PTCH1-226ENST00000553011 PTH1RQ03431 593 aa16.77■□□□□ 0.28
PTCH1-226ENST00000553011 ICA1Q05084 483 aa16.77■□□□□ 0.28
PTCH1-226ENST00000553011 SIAH1Q8IUQ4 282 aa16.77■□□□□ 0.28
PTCH1-226ENST00000553011 ZNF444Q8N0Y2 327 aaPredicted RBP16.77■□□□□ 0.28
PTCH1-226ENST00000553011 ZFYVE28Q9HCC9 887 aa16.77■□□□□ 0.28
PTCH1-226ENST00000553011 PRDM10Q9NQV6 1147 aa16.77■□□□□ 0.28
PTCH1-226ENST00000553011 TMOD4Q9NZQ9 345 aa16.77■□□□□ 0.28
PTCH1-226ENST00000553011 AGTPBP1Q9UPW5 1226 aa16.77■□□□□ 0.28
PTCH1-226ENST00000553011 GPR25O00155 361 aa16.76■□□□□ 0.27
PTCH1-226ENST00000553011 CYP2C8P10632 490 aa16.76■□□□□ 0.27
PTCH1-226ENST00000553011 FAM47AQ5JRC9 791 aa16.76■□□□□ 0.27
PTCH1-226ENST00000553011 USP17L2Q6R6M4 530 aa16.76■□□□□ 0.27
PTCH1-226ENST00000553011 TBC1D10CQ8IV04 446 aa16.76■□□□□ 0.27
PTCH1-226ENST00000553011 ESYT1Q9BSJ8 1104 aa16.76■□□□□ 0.27
PTCH1-226ENST00000553011 KIAA1683Q9H0B3 1180 aa16.76■□□□□ 0.27
PTCH1-226ENST00000553011 EMILIN3Q9NT22 766 aa16.76■□□□□ 0.27
PTCH1-226ENST00000553011 ZSWIM8A7E2V4 1837 aa16.75■□□□□ 0.27
PTCH1-226ENST00000553011 FGRP09769 529 aa16.75■□□□□ 0.27
PTCH1-226ENST00000553011 EEF2P13639 858 aaKnown RBP16.75■□□□□ 0.27
PTCH1-226ENST00000553011 TFAP4Q01664 338 aa16.75■□□□□ 0.27
PTCH1-226ENST00000553011 ATP2B2Q01814 1243 aa16.75■□□□□ 0.27
PTCH1-226ENST00000553011 ZNF296Q8WUU4 475 aaPredicted RBP16.75■□□□□ 0.27
PTCH1-226ENST00000553011 KANSL2Q9H9L4 492 aa16.75■□□□□ 0.27
PTCH1-226ENST00000553011 ARHGEF10LQ9HCE6 1279 aa16.75■□□□□ 0.27
PTCH1-226ENST00000553011 TOMM22Q9NS69 142 aa16.75■□□□□ 0.27
PTCH1-226ENST00000553011 SLC45A1Q9Y2W3 748 aa16.75■□□□□ 0.27
PTCH1-226ENST00000553011 ADGRA2Q96PE1 1338 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 IGKV6D-41A0A0C4DH26 115 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 ZNF213O14771 459 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 ORC4O43929 436 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 CDC45O75419 566 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 USP14P54578 494 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 NOM1Q5C9Z4 860 aaKnown RBP16.74■□□□□ 0.27
PTCH1-226ENST00000553011 RRP12Q5JTH9 1297 aaKnown RBP16.74■□□□□ 0.27
PTCH1-226ENST00000553011 KIAA1755Q5JYT7 1200 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 AKNAD1Q5T1N1 836 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 NEDD1Q8NHV4 660 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 C12orf42Q96LP6 360 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 PARK7Q99497 189 aaKnown RBP16.74■□□□□ 0.27
PTCH1-226ENST00000553011 CTNNA3Q9UI47 895 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 PLIN4Q96Q06 1357 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 DOCK3Q8IZD9 2030 aa16.74■□□□□ 0.27
PTCH1-226ENST00000553011 PARP14Q460N5 1801 aa16.73■□□□□ 0.27
PTCH1-226ENST00000553011 RLFQ13129 1914 aa16.73■□□□□ 0.27
PTCH1-226ENST00000553011 RANBP6O60518 1105 aaKnown RBP16.73■□□□□ 0.27
PTCH1-226ENST00000553011 TLR2O60603 784 aa16.73■□□□□ 0.27
PTCH1-226ENST00000553011 TSPY3P0CV98 308 aa16.73■□□□□ 0.27
PTCH1-226ENST00000553011 TSPY8P0CW00 308 aa16.73■□□□□ 0.27
PTCH1-226ENST00000553011 IMMTQ16891 758 aaKnown RBP16.73■□□□□ 0.27
PTCH1-226ENST00000553011 COL13A1Q5TAT6 717 aaPredicted RBP16.73■□□□□ 0.27
PTCH1-226ENST00000553011 NKX2-3Q8TAU0 364 aa16.73■□□□□ 0.27
PTCH1-226ENST00000553011 STAG1Q8WVM7 1258 aa16.73■□□□□ 0.27
PTCH1-226ENST00000553011 CEP95Q96GE4 821 aa16.73■□□□□ 0.27
PTCH1-226ENST00000553011 ASCC2Q9H1I8 757 aaPredicted RBP16.73■□□□□ 0.27
PTCH1-226ENST00000553011 CPA4Q9UI42 421 aa16.73■□□□□ 0.27
PTCH1-226ENST00000553011 TMX2Q9Y320 296 aa16.73■□□□□ 0.27
PTCH1-226ENST00000553011 MGAMO43451 1857 aa16.73■□□□□ 0.27
PTCH1-226ENST00000553011 NEDD4P46934 1319 aa16.72■□□□□ 0.27
PTCH1-226ENST00000553011 TSPY2A6NKD2 308 aa16.72■□□□□ 0.27
PTCH1-226ENST00000553011 FKTNO75072 461 aa16.72■□□□□ 0.27
PTCH1-226ENST00000553011 VCAM1P19320 739 aa16.72■□□□□ 0.27
PTCH1-226ENST00000553011 PABPC4Q13310 644 aaKnown RBP eCLIP16.72■□□□□ 0.27
PTCH1-226ENST00000553011 MFSD6Q6ZSS7 791 aa16.72■□□□□ 0.27
PTCH1-226ENST00000553011 LSG1Q9H089 658 aaKnown RBP16.72■□□□□ 0.27
PTCH1-226ENST00000553011 SH2D4AQ9H788 454 aa16.72■□□□□ 0.27
PTCH1-226ENST00000553011 MTMR4Q9NYA4 1195 aa16.72■□□□□ 0.27
PTCH1-226ENST00000553011 NYAP2Q9P242 653 aa16.72■□□□□ 0.27
PTCH1-226ENST00000553011 U3KPZ7 1027 aaPredicted RBP16.72■□□□□ 0.27
PTCH1-226ENST00000553011 NMT2O60551 498 aa16.71■□□□□ 0.27
PTCH1-226ENST00000553011 OSBPP22059 807 aa16.71■□□□□ 0.27
PTCH1-226ENST00000553011 HOXA7P31268 230 aaPredicted RBP16.71■□□□□ 0.27
PTCH1-226ENST00000553011 C17orf99Q6UX52 265 aa16.71■□□□□ 0.27
PTCH1-226ENST00000553011 KIAA1211Q6ZU35 1233 aa16.71■□□□□ 0.27
PTCH1-226ENST00000553011 SPICE1Q8N0Z3 855 aa16.71■□□□□ 0.27
PTCH1-226ENST00000553011 MAP4K1Q92918 833 aa16.71■□□□□ 0.27
PTCH1-226ENST00000553011 RNF41Q9H4P4 317 aaPredicted RBP16.71■□□□□ 0.27
PTCH1-226ENST00000553011 VCPKMTQ9H867 229 aa16.71■□□□□ 0.27
PTCH1-226ENST00000553011 IL17RBQ9NRM6 502 aa16.71■□□□□ 0.27
PTCH1-226ENST00000553011 CLIP2Q9UDT6 1046 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms