RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PNMA1Q8ND90 353 aa6.4□□□□□ -1.39
LIMA1-215ENST00000552823 WASF1Q92558 559 aa6.4□□□□□ -1.39
LIMA1-215ENST00000552823 SMARCE1Q969G3 411 aa6.4□□□□□ -1.39
LIMA1-215ENST00000552823 SIPA1L3O60292 1781 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-215ENST00000552823 SFPQP23246 707 aaKnown RBP eCLIP6.39□□□□□ -1.39
LIMA1-215ENST00000552823 SLC16A2P36021 539 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 NLRP12P59046 1061 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 IKQ13123 557 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-215ENST00000552823 PTPAQ15257 358 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 LETM2Q2VYF4 491 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 KRBA2Q6ZNG9 492 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 SYMPKQ92797 1274 aaKnown RBP6.39□□□□□ -1.39
LIMA1-215ENST00000552823 BRMS1Q9HCU9 246 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 NFE2L3Q9Y4A8 694 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 MYH14Q7Z406 1995 aaKnown RBP6.39□□□□□ -1.39
LIMA1-215ENST00000552823 CCDC194A0A1B0GVG4 234 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 TPM2P07951 284 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 PDIA4P13667 645 aaKnown RBP6.39□□□□□ -1.39
LIMA1-215ENST00000552823 FMR1Q06787 632 aaKnown RBP eCLIP6.39□□□□□ -1.39
LIMA1-215ENST00000552823 KARSQ15046 597 aaKnown RBP6.39□□□□□ -1.39
LIMA1-215ENST00000552823 VPS72Q15906 364 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 TTC38Q5R3I4 469 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 SGMS1Q86VZ5 419 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 LRRC8AQ8IWT6 810 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 DESI2Q9BSY9 194 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 ANKRD2Q9GZV1 360 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 BIN2Q9UBW5 565 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-215ENST00000552823 GGA1Q9UJY5 639 aa6.39□□□□□ -1.39
LIMA1-215ENST00000552823 APBA3O96018 575 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 TOP1P11387 765 aaKnown RBP6.38□□□□□ -1.39
LIMA1-215ENST00000552823 PTPN14Q15678 1187 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 ALX1Q15699 326 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 SHROOM1Q2M3G4 852 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-215ENST00000552823 SYT10Q6XYQ8 523 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 PLA2G4DQ86XP0 818 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 TMTC2Q8N394 836 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 COA7Q96BR5 231 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 SLIT2O94813 1529 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 DISP2A7MBM2 1401 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 A0A087X0B3 334 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 BAG3O95817 575 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 NAPAP54920 295 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 EVCP57679 992 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 ST5P78524 1137 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 RAD51AP2Q09MP3 1159 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 POSTNQ15063 836 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 SEC23AQ15436 765 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 PKN1Q16512 942 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 CCDC96Q2M329 555 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 RRAGBQ5VZM2 374 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 BARGINQ6ZT62 677 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 ZNF804AQ7Z570 1209 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 ZNF512BQ96KM6 892 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-215ENST00000552823 ZC3H12CQ9C0D7 883 aaKnown RBP6.38□□□□□ -1.39
LIMA1-215ENST00000552823 VPS16Q9H269 839 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 CD209Q9NNX6 404 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 POLLQ9UGP5 575 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 MAN1B1Q9UKM7 699 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 TTF2Q9UNY4 1162 aaKnown RBP6.38□□□□□ -1.39
LIMA1-215ENST00000552823 STRCQ7RTU9 1775 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 TUBGCP6Q96RT7 1819 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 A0A1W2PQ27 194 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 A0A1W2PQ64 194 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 A0A1W2PQD8 194 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 CUTAO60888 179 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 BMP6P22004 513 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 TM4SF1P30408 202 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 HOXD11P31277 338 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-215ENST00000552823 TROAPQ12815 778 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 GRAPQ13588 217 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 RILPL1Q5EBL4 403 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 TYW1BQ6NUM6 668 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 CCDC112Q8NEF3 446 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 GRAPLQ8TC17 118 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-215ENST00000552823 HPS3Q969F9 1004 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 PCMTD1Q96MG8 357 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-215ENST00000552823 EYA3Q99504 573 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 MAP3K14Q99558 947 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 ZHX3Q9H4I2 956 aa6.38□□□□□ -1.39
LIMA1-215ENST00000552823 SMTNL1A8MU46 457 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 CEP135Q66GS9 1140 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 TMX4Q9H1E5 349 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-215ENST00000552823 IL17RBQ9NRM6 502 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 TMEM260Q9NX78 707 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 COL4A1P02462 1669 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 USP54Q70EL1 1684 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 COL1A1P02452 1464 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-215ENST00000552823 KLRF2D3W0D1 207 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 TEX33O43247 280 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 SCG2P13521 617 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 GYS1P13807 737 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 CHRNA5P30532 468 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 MYL5Q02045 173 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 ZYXQ15942 572 aaKnown RBP6.37□□□□□ -1.39
LIMA1-215ENST00000552823 ENOX2Q16206 610 aaKnown RBP6.37□□□□□ -1.39
LIMA1-215ENST00000552823 RESP18Q5W5W9 173 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 ARMCX5Q6P1M9 558 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 DPP8Q6V1X1 898 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-215ENST00000552823 TMTC3Q6ZXV5 915 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 KCTD1Q719H9 257 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms