RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CTAGE4Q8IX94 777 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 MICALL1Q8N3F8 863 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 CEP112Q8N8E3 955 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 ZCRB1Q8TBF4 217 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 FAM71BQ8TC56 605 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 IGDCC4Q8TDY8 1250 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 HDAC7Q8WUI4 952 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 TMOD3Q9NYL9 352 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 GUCA1BQ9UMX6 200 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 ANGEL1Q9UNK9 670 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 MYO5AQ9Y4I1 1855 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 CPDO75976 1380 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 DDX60Q8IY21 1712 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 RCCD1A6NED2 376 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 CYP27B1O15528 508 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 PTPREP23469 700 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 TRIM29Q14134 588 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 DHX8Q14562 1220 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 CPLX2Q6PUV4 134 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 GPIHBP1Q8IV16 184 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 NOSTRINQ8IVI9 506 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 SPATA20Q8TB22 786 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 RRP36Q96EU6 259 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 XAGE2Q96GT9 111 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 NAPGQ99747 312 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 VPS16Q9H269 839 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 MYO6Q9UM54 1294 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 MAPK8IP1Q9UQF2 711 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 CDHR2Q9BYE9 1310 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 SIPA1L3O60292 1781 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 PPP1R3GB7ZBB8 358 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 NKRFO15226 690 aaKnown RBP eCLIP5.49□□□□□ -1.53
LIMA1-214ENST00000552783 PPFIA4O75335 1185 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 PLCD1P51178 756 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 CTDSPL2Q05D32 466 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 DNAJC21Q5F1R6 531 aaKnown RBP5.49□□□□□ -1.53
LIMA1-214ENST00000552783 CDKAL1Q5VV42 579 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 DIS3L2Q8IYB7 885 aaKnown RBP5.49□□□□□ -1.53
LIMA1-214ENST00000552783 MLKLQ8NB16 471 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 BLZF1Q9H2G9 400 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 LY9Q9HBG7 655 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 GEMIN8Q9NWZ8 242 aaKnown RBP5.49□□□□□ -1.53
LIMA1-214ENST00000552783 SAMM50Q9Y512 469 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 H7C1W4 665 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 EYA2O00167 538 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 ADAMTS3O15072 1205 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 ERLIN1O75477 346 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 EIF3JO75822 258 aaKnown RBP5.49□□□□□ -1.53
LIMA1-214ENST00000552783 IARSP41252 1262 aaKnown RBP5.49□□□□□ -1.53
LIMA1-214ENST00000552783 PPARAQ07869 468 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 HSP90B2PQ58FF3 399 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 TADA2BQ86TJ2 420 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 PPFIBP1Q86W92 1011 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 JMYQ8N9B5 988 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 AFAP1L1Q8TED9 768 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 NUP133Q8WUM0 1156 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 PPM1EQ8WY54 764 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 YY1AP1Q9H869 796 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 ABHD10Q9NUJ1 306 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 TAB2Q9NYJ8 693 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 SMARCAL1Q9NZC9 954 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 TRMT112Q9UI30 125 aaKnown RBP5.49□□□□□ -1.53
LIMA1-214ENST00000552783 TBC1D2BQ9UPU7 963 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 IL15P40933 162 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-214ENST00000552783 MCAMP43121 646 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 USP14P54578 494 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 KRT31Q15323 416 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 PLBD2Q8NHP8 589 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 SECISBP2LQ93073 1101 aaKnown RBP5.49□□□□□ -1.53
LIMA1-214ENST00000552783 MTRQ99707 1265 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 CABP5Q9NP86 173 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 ZSWIM5Q9P217 1185 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 ABCF2Q9UG63 623 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 SYNRGQ9UMZ2 1314 aa5.49□□□□□ -1.53
LIMA1-214ENST00000552783 GOLGA8AA7E2F4 631 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 SNAP23O00161 211 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 AARSP49588 968 aaKnown RBP eCLIP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 IRAK1P51617 712 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 HERVK_113P62684 666 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 CT47A1Q5JQC4 288 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 SPATA1Q5VX52 437 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 WDR93Q6P2C0 686 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 TRAPPC11Q7Z392 1133 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 PAGE5Q96GU1 130 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 NCAPGQ9BPX3 1015 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 LACRTQ9GZZ8 138 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 VPS54Q9P1Q0 977 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 MKRN1Q9UHC7 482 aaKnown RBP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 HOOK1Q9UJC3 728 aaKnown RBP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 CTNND2Q9UQB3 1225 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 GRIN2DO15399 1336 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 ZBTB43O43298 467 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 PRDM1O75626 825 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 MMP1P03956 469 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 C2orf54Q08AI8 447 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 SLC4A8Q2Y0W8 1093 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 MSL3Q8N5Y2 521 aaKnown RBP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 GOLGA6L1Q8N7Z2 621 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 SMCR8Q8TEV9 937 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 COG1Q8WTW3 980 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms