RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 TRAPPC3LQ5T215 181 aa8.67□□□□□ -1.02
LIMA1-210ENST00000552045 FOXB2Q5VYV0 432 aa8.67□□□□□ -1.02
LIMA1-210ENST00000552045 KRT26Q7Z3Y9 468 aa8.67□□□□□ -1.02
LIMA1-210ENST00000552045 KCT2Q8NC54 265 aa8.67□□□□□ -1.02
LIMA1-210ENST00000552045 NINJ1Q92982 152 aa8.67□□□□□ -1.02
LIMA1-210ENST00000552045 DPH2Q9BQC3 489 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-210ENST00000552045 ATXN3LQ9H3M9 355 aa8.67□□□□□ -1.02
LIMA1-210ENST00000552045 SUSD2Q9UGT4 822 aa8.67□□□□□ -1.02
LIMA1-210ENST00000552045 A0A1W2PQU0 124 aa8.66□□□□□ -1.02
LIMA1-210ENST00000552045 ANKRD34BA5PLL1 514 aa8.66□□□□□ -1.02
LIMA1-210ENST00000552045 DLL1O00548 723 aa8.66□□□□□ -1.02
LIMA1-210ENST00000552045 TP53P04637 393 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-210ENST00000552045 SLBPQ14493 270 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIMA1-210ENST00000552045 TTLL4Q14679 1199 aa8.66□□□□□ -1.02
LIMA1-210ENST00000552045 TM4SF20Q53R12 229 aa8.66□□□□□ -1.02
LIMA1-210ENST00000552045 TDRD10Q5VZ19 366 aaKnown RBP8.66□□□□□ -1.02
LIMA1-210ENST00000552045 CDC37L1Q7L3B6 337 aa8.66□□□□□ -1.02
LIMA1-210ENST00000552045 FBXO11Q86XK2 927 aa8.66□□□□□ -1.02
LIMA1-210ENST00000552045 APBA2Q99767 749 aa8.66□□□□□ -1.02
LIMA1-210ENST00000552045 FAM86C1Q9NVL1 165 aa8.66□□□□□ -1.02
LIMA1-210ENST00000552045 DDX56Q9NY93 547 aaKnown RBP8.66□□□□□ -1.02
LIMA1-210ENST00000552045 KLHL42Q9P2K6 505 aa8.66□□□□□ -1.02
LIMA1-210ENST00000552045 AP4E1Q9UPM8 1137 aa8.66□□□□□ -1.02
LIMA1-210ENST00000552045 C9IYK1 514 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 WISP1O95388 367 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 NEFMP07197 916 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 ADH5P11766 374 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 L1CAMP32004 1257 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 CAP2P40123 477 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 CBX2Q14781 532 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-210ENST00000552045 NUTM2GQ5VZR2 741 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 UBE3DQ7Z6J8 389 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 NIM1KQ8IY84 436 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 BAHD1Q8TBE0 780 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-210ENST00000552045 SMARCC1Q92922 1105 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-210ENST00000552045 KISS1RQ969F8 398 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-210ENST00000552045 MFSD3Q96ES6 412 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.65□□□□□ -1.02
LIMA1-210ENST00000552045 SUGCTQ9HAC7 445 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 CYP4F12Q9HCS2 524 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 ARHGEF4Q9NR80 690 aa8.65□□□□□ -1.02
LIMA1-210ENST00000552045 CLEC3AO75596 197 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 RFPL3O75679 317 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 CST3P01034 146 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-210ENST00000552045 EPHX1P07099 455 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 CELA2BP08218 269 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-210ENST00000552045 DGKGP49619 791 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 PABPC4Q13310 644 aaKnown RBP eCLIP8.64□□□□□ -1.03
LIMA1-210ENST00000552045 PRAMEF13Q5VWM6 474 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 HEATR6Q6AI08 1181 aaKnown RBP8.64□□□□□ -1.03
LIMA1-210ENST00000552045 LYPD4Q6UWN0 246 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 KIAA1211Q6ZU35 1233 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 DHX37Q8IY37 1157 aaKnown RBP8.64□□□□□ -1.03
LIMA1-210ENST00000552045 FMR1NBQ8N0W7 255 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-210ENST00000552045 SMG8Q8ND04 991 aaKnown RBP8.64□□□□□ -1.03
LIMA1-210ENST00000552045 CYB5D2Q8WUJ1 264 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 STAG1Q8WVM7 1258 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 EXOC2Q96KP1 924 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 HAUS7Q99871 368 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 RNF208Q9H0X6 261 aa8.64□□□□□ -1.03
LIMA1-210ENST00000552045 A0A0A0MRY4 1105 aa8.63□□□□□ -1.03
LIMA1-210ENST00000552045 TRAV20A0A0B4J274 112 aa8.63□□□□□ -1.03
LIMA1-210ENST00000552045 HOXB4P17483 251 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-210ENST00000552045 SOX4Q06945 474 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-210ENST00000552045 HSP90AA2PQ14568 343 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-210ENST00000552045 PLEKHG6Q3KR16 790 aa8.63□□□□□ -1.03
LIMA1-210ENST00000552045 FAM209AQ5JX71 171 aa8.63□□□□□ -1.03
LIMA1-210ENST00000552045 AXDND1Q5T1B0 1012 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-210ENST00000552045 ZNF385CQ66K41 422 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-210ENST00000552045 ISL2Q96A47 359 aa8.63□□□□□ -1.03
LIMA1-210ENST00000552045 CDC6Q99741 560 aa8.63□□□□□ -1.03
LIMA1-210ENST00000552045 DHRS4Q9BTZ2 278 aa8.63□□□□□ -1.03
LIMA1-210ENST00000552045 GSX1Q9H4S2 264 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-210ENST00000552045 NCOA5Q9HCD5 579 aaKnown RBP8.63□□□□□ -1.03
LIMA1-210ENST00000552045 PLD2O14939 933 aa8.62□□□□□ -1.03
LIMA1-210ENST00000552045 CBFA2T2O43439 604 aa8.62□□□□□ -1.03
LIMA1-210ENST00000552045 RAC1P63000 192 aa8.62□□□□□ -1.03
LIMA1-210ENST00000552045 INSM1Q01101 510 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-210ENST00000552045 ACAD11Q709F0 780 aa8.62□□□□□ -1.03
LIMA1-210ENST00000552045 WHAMMQ8TF30 809 aa8.62□□□□□ -1.03
LIMA1-210ENST00000552045 AARSD1Q9BTE6 412 aaKnown RBP8.62□□□□□ -1.03
LIMA1-210ENST00000552045 KLHL25Q9H0H3 589 aa8.62□□□□□ -1.03
LIMA1-210ENST00000552045 IRF2BPLQ9H1B7 796 aa8.62□□□□□ -1.03
LIMA1-210ENST00000552045 TYW1Q9NV66 732 aaKnown RBP8.62□□□□□ -1.03
LIMA1-210ENST00000552045 LRP2BPQ9P2M1 347 aa8.62□□□□□ -1.03
LIMA1-210ENST00000552045 MRPS23Q9Y3D9 190 aaKnown RBP8.62□□□□□ -1.03
LIMA1-210ENST00000552045 TRBV23-1A0A0A0MS06 115 aa8.61□□□□□ -1.03
LIMA1-210ENST00000552045 IRS4O14654 1257 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-210ENST00000552045 RNGTTO60942 597 aaKnown RBP8.61□□□□□ -1.03
LIMA1-210ENST00000552045 MYCLP1P12525 358 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-210ENST00000552045 DRD2P14416 443 aa8.61□□□□□ -1.03
LIMA1-210ENST00000552045 LORP23490 312 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-210ENST00000552045 PPP2R2AP63151 447 aa8.61□□□□□ -1.03
LIMA1-210ENST00000552045 FNDC3BQ53EP0 1204 aaKnown RBP8.61□□□□□ -1.03
LIMA1-210ENST00000552045 YOD1Q5VVQ6 348 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-210ENST00000552045 DYMQ7RTS9 669 aa8.61□□□□□ -1.03
LIMA1-210ENST00000552045 THNSL2Q86YJ6 484 aa8.61□□□□□ -1.03
LIMA1-210ENST00000552045 CCDC144CPQ8IYA2 1237 aa8.61□□□□□ -1.03
LIMA1-210ENST00000552045 ZNF513Q8N8E2 541 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-210ENST00000552045 LRRN4CLQ8ND94 238 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms