RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 ERVK-24P63145 666 aa13.1□□□□□ -0.31
VTI1BP3-201ENST00000550220 LBX2Q6XYB7 198 aa13.1□□□□□ -0.31
VTI1BP3-201ENST00000550220 CATSPERGQ6ZRH7 1159 aa13.1□□□□□ -0.31
VTI1BP3-201ENST00000550220 TMEM179Q6ZVK1 233 aa13.1□□□□□ -0.31
VTI1BP3-201ENST00000550220 SDR42E1Q8WUS8 393 aa13.1□□□□□ -0.31
VTI1BP3-201ENST00000550220 ARMT1Q9H993 441 aa13.1□□□□□ -0.31
VTI1BP3-201ENST00000550220 PAK6Q9NQU5 681 aaPredicted RBP13.1□□□□□ -0.31
VTI1BP3-201ENST00000550220 HOXC10Q9NYD6 342 aa13.1□□□□□ -0.31
VTI1BP3-201ENST00000550220 RBBP6Q7Z6E9 1792 aaKnown RBP13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 MBD4O95243 580 aa13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 ZFYP08048 801 aaPredicted RBP13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 VCAM1P19320 739 aa13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 DPF3Q92784 378 aa13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 SHISA4Q96DD7 197 aa13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 EDC3Q96F86 508 aaKnown RBP13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 DEFB118Q96PH6 123 aa13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 SH2D4AQ9H788 454 aa13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 CWC22Q9HCG8 908 aaKnown RBP13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 TXNRD2Q9NNW7 524 aa13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 HMX1Q9NP08 348 aaPredicted RBP13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 NR2E3Q9Y5X4 410 aa13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 TNRC18O15417 2968 aaPredicted RBP13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 RPTORQ8N122 1335 aa13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 PHIPQ8WWQ0 1821 aa13.09□□□□□ -0.31
VTI1BP3-201ENST00000550220 FARP2O94887 1054 aaPredicted RBP13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 RGS2P41220 211 aa13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 SEPT2Q15019 361 aa13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 ZYXQ15942 572 aaKnown RBP13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 SHROOM1Q2M3G4 852 aaPredicted RBP13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 C12orf60Q5U649 245 aa13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 GIMAP6Q6P9H5 292 aa13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 PLEKHH3Q7Z736 793 aa13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 ANKLE1Q8NAG6 615 aa13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 LPAR1Q92633 364 aa13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 ARHGEF10LQ9HCE6 1279 aa13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 SLC4A4Q9Y6R1 1079 aa13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 CENPFP49454 3210 aa13.08□□□□□ -0.32
VTI1BP3-201ENST00000550220 USP17L12C9JPN9 530 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 USP17L21D6R901 530 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 ERC2O15083 957 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 SMARCA5O60264 1052 aaPredicted RBP13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 GUCY1A2P33402 732 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 COG2Q14746 738 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 Q3C1V9 767 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 GPR142Q7Z601 462 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 UBE2Q1Q7Z7E8 422 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 KBTBD3Q8NAB2 608 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 ACER1Q8TDN7 264 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 PAGR1Q9BTK6 254 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 CRISPLD2Q9H0B8 497 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 ARPP21Q9UBL0 812 aaPredicted RBP13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 ZBTB47Q9UFB7 747 aaPredicted RBP13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 PTPRFP10586 1907 aa13.07□□□□□ -0.32
VTI1BP3-201ENST00000550220 PRKAB2O43741 272 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 GNAT2P19087 354 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 CYP2B6P20813 491 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 CDK8P49336 464 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 MORN1Q5T089 497 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 MB21D1Q8N884 522 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 RPAP3Q9H6T3 665 aaPredicted RBP13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 KANSL2Q9H9L4 492 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 ZNF287Q9HBT7 754 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 PCDH10Q9P2E7 1040 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 IVNS1ABPQ9Y6Y0 642 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 LOC285556D6RIA3 1793 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 TTC41PQ6P2S7 1318 aa13.06□□□□□ -0.32
VTI1BP3-201ENST00000550220 FOCADQ5VW36 1801 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 SLC15A5A6NIM6 579 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 RNF113AO15541 343 aaKnown RBP13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 STRNO43815 780 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 CYP2D6P10635 497 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 ZKSCAN1P17029 563 aaPredicted RBP13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 ICA1Q05084 483 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 MAP2K5Q13163 448 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 AAMPQ13685 434 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 SBK1Q52WX2 424 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 HABP4Q5JVS0 413 aaKnown RBP13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 PPP4R3CPQ6ZMV5 832 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 C16orf86Q6ZW13 317 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 NECAB2Q7Z6G3 386 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 APPBP2Q92624 585 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 USP6NLQ92738 828 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 STRBPQ96SI9 672 aaKnown RBP13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 APBA2Q99767 749 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 PUS7LQ9H0K6 701 aaKnown RBP13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 PORCNQ9H237 461 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 TMX2Q9Y320 296 aa13.05□□□□□ -0.32
VTI1BP3-201ENST00000550220 SIPA1L1O43166 1804 aa13.04□□□□□ -0.32
VTI1BP3-201ENST00000550220 A0A1W2PRG0 241 aa13.04□□□□□ -0.32
VTI1BP3-201ENST00000550220 SPDYE16A6NNV3 312 aaPredicted RBP13.04□□□□□ -0.32
VTI1BP3-201ENST00000550220 H0YGN5 161 aa13.04□□□□□ -0.32
VTI1BP3-201ENST00000550220 MAP3K21Q5TCX8 1036 aa13.04□□□□□ -0.32
VTI1BP3-201ENST00000550220 MFSD14CQ5VZR4 134 aa13.04□□□□□ -0.32
VTI1BP3-201ENST00000550220 CTR9Q6PD62 1173 aa13.04□□□□□ -0.32
VTI1BP3-201ENST00000550220 TRIB2Q92519 343 aa13.04□□□□□ -0.32
VTI1BP3-201ENST00000550220 DYNLL2Q96FJ2 89 aa13.04□□□□□ -0.32
VTI1BP3-201ENST00000550220 TANGO6Q9C0B7 1094 aa13.04□□□□□ -0.32
VTI1BP3-201ENST00000550220 SLC5A4Q9NY91 659 aa13.04□□□□□ -0.32
VTI1BP3-201ENST00000550220 ZSWIM8A7E2V4 1837 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms