RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 LAS1LQ9Y4W2 734 aaKnown RBP8.38□□□□□ -1.07
LIMA1-204ENST00000549064 MUC3AQ02505 3323 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 MYPNQ86TC9 1320 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 CLSPNQ9HAW4 1339 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 SNAP23O00161 211 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 MYO1BO43795 1136 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 GNRH1P01148 92 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 ERCC3P19447 782 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 RBM5P52756 815 aaKnown RBP eCLIP8.37□□□□□ -1.07
LIMA1-204ENST00000549064 CTSWP56202 376 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 OCLNQ16625 522 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 SH3RF1Q7Z6J0 888 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.37□□□□□ -1.07
LIMA1-204ENST00000549064 C1orf216Q8TAB5 229 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 BAP1Q92560 729 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 FOXJ1Q92949 421 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 FAM163AQ96GL9 167 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-204ENST00000549064 TEPSINQ96N21 525 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 CD209Q9NNX6 404 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 BABAM1Q9NWV8 329 aa8.37□□□□□ -1.07
LIMA1-204ENST00000549064 CXXC1Q9P0U4 656 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-204ENST00000549064 KIAA1522Q9P206 1035 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-204ENST00000549064 H3BRB1 525 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 CHL1O00533 1208 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 SGPL1O95470 568 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 HSP90B1P14625 803 aaKnown RBP8.36□□□□□ -1.07
LIMA1-204ENST00000549064 PRKCZQ05513 592 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 C4orf48Q5BLP8 95 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 C17orf99Q6UX52 265 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 C7orf61Q8IZ16 206 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 CCDC191Q8NCU4 936 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 TTLL11Q8NHH1 800 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 DIS3LQ8TF46 1054 aaKnown RBP8.36□□□□□ -1.07
LIMA1-204ENST00000549064 MRRFQ96E11 262 aaKnown RBP8.36□□□□□ -1.07
LIMA1-204ENST00000549064 TUT1Q9H6E5 874 aaKnown RBP8.36□□□□□ -1.07
LIMA1-204ENST00000549064 HYPKQ9NX55 129 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 CWC25Q9NXE8 425 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-204ENST00000549064 ZNF70Q9UC06 446 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-204ENST00000549064 GABRQQ9UN88 632 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 LEMD3Q9Y2U8 911 aa8.36□□□□□ -1.07
LIMA1-204ENST00000549064 ADGRA2Q96PE1 1338 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 TCP10L2B9ZVM9 353 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 WDHD1O75717 1129 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-204ENST00000549064 CETPP11597 493 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 ZNF16P17020 682 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-204ENST00000549064 SYN1P17600 705 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 BMP8BP34820 402 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 UBXN2AP68543 259 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 TAS1R3Q7RTX0 852 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 BPHLQ86WA6 291 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-204ENST00000549064 GIPC2Q8TF65 315 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 PAWRQ96IZ0 340 aaKnown RBP8.35□□□□□ -1.07
LIMA1-204ENST00000549064 TMEM39BQ9GZU3 492 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 TDRD3Q9H7E2 651 aaKnown RBP8.35□□□□□ -1.07
LIMA1-204ENST00000549064 PRDM6Q9NQX0 595 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 PCDHB11Q9Y5F2 797 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 PCDHGA11Q9Y5H2 935 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 CSADQ9Y600 493 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 SNCAIPQ9Y6H5 919 aa8.35□□□□□ -1.07
LIMA1-204ENST00000549064 IRS2Q9Y4H2 1338 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 ANKRD33BA6NCL7 494 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 TFRCP02786 760 aaKnown RBP8.34□□□□□ -1.07
LIMA1-204ENST00000549064 ELNP15502 786 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 HOXD10P28358 340 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 TMPOP42166 694 aaKnown RBP8.34□□□□□ -1.07
LIMA1-204ENST00000549064 KCNJ4P48050 445 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 LRIT3Q3SXY7 679 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 DUSP27Q5VZP5 1158 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 THSD4Q6ZMP0 1018 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 ZKSCAN4Q969J2 545 aaPredicted RBP8.34□□□□□ -1.07
LIMA1-204ENST00000549064 GUCD1Q96NT3 240 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 DEFB118Q96PH6 123 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 MTRQ99707 1265 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 HINFPQ9BQA5 517 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 MKNK1Q9BUB5 465 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 SLC6A16Q9GZN6 736 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 ZCCHC17Q9NP64 241 aaKnown RBP8.34□□□□□ -1.07
LIMA1-204ENST00000549064 SEPT3Q9UH03 358 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 RAPGEFL1Q9UHV5 662 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 DDX60LQ5H9U9 1706 aaKnown RBP8.34□□□□□ -1.07
LIMA1-204ENST00000549064 DOCK3Q8IZD9 2030 aa8.34□□□□□ -1.07
LIMA1-204ENST00000549064 RPTORQ8N122 1335 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 TAF5LO75529 589 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 INHAP05111 366 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 HOXB7P09629 217 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 IGHMBP2P38935 993 aaKnown RBP8.33□□□□□ -1.08
LIMA1-204ENST00000549064 MAGEA10P43363 369 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-204ENST00000549064 CHRNDQ07001 517 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 SNAPC2Q13487 334 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 TNFAIP1Q13829 316 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 RNF20Q5VTR2 975 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 LHX8Q68G74 356 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 ERO1BQ86YB8 467 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 NPAS4Q8IUM7 802 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 TDHQ8IZJ6 230 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-204ENST00000549064 ZNF511Q8NB15 262 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 ZNF516Q92618 1163 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 FAM161BQ96MY7 647 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 METTL22Q9BUU2 404 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms