RNA–Protein interactions for RNA: ENST00000547764.1

PRPF40B-206, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 803 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-206ENST00000547764 NEFLP07196 543 aa22.35■■□□□ 1.17
PRPF40B-206ENST00000547764 CENPBP07199 599 aaPredicted RBP22.35■■□□□ 1.17
PRPF40B-206ENST00000547764 USP17L2Q6R6M4 530 aa22.35■■□□□ 1.17
PRPF40B-206ENST00000547764 FEZ1Q99689 392 aa22.35■■□□□ 1.17
PRPF40B-206ENST00000547764 DIAPH3Q9NSV4 1193 aa22.35■■□□□ 1.17
PRPF40B-206ENST00000547764 HIP1O00291 1037 aa22.34■■□□□ 1.17
PRPF40B-206ENST00000547764 CAP1Q01518 475 aa22.34■■□□□ 1.17
PRPF40B-206ENST00000547764 ZYXQ15942 572 aaKnown RBP22.34■■□□□ 1.17
PRPF40B-206ENST00000547764 CWC27Q6UX04 472 aaKnown RBP22.34■■□□□ 1.17
PRPF40B-206ENST00000547764 KIAA1683Q9H0B3 1180 aa22.34■■□□□ 1.17
PRPF40B-206ENST00000547764 MKNK2Q9HBH9 465 aa22.34■■□□□ 1.17
PRPF40B-206ENST00000547764 CCDC171Q6TFL3 1326 aa22.33■■□□□ 1.17
PRPF40B-206ENST00000547764 RASA1P20936 1047 aa22.33■■□□□ 1.17
PRPF40B-206ENST00000547764 PPARAQ07869 468 aa22.33■■□□□ 1.17
PRPF40B-206ENST00000547764 PABPC4Q13310 644 aaKnown RBP eCLIP22.33■■□□□ 1.17
PRPF40B-206ENST00000547764 PNMA3Q9UL41 463 aa22.33■■□□□ 1.17
PRPF40B-206ENST00000547764 A0A1W2PRG0 241 aa22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 HSPD1P10809 573 aaKnown RBP22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 BCRP11274 1271 aa22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 USP14P54578 494 aa22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 ALX1Q15699 326 aa22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 CLEC10AQ8IUN9 316 aa22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 SIAH1Q8IUQ4 282 aa22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 SMCR8Q8TEV9 937 aaPredicted RBP22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 CCDC136Q96JN2 1154 aa22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 C12orf42Q96LP6 360 aa22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 ASCC2Q9H1I8 757 aaPredicted RBP22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 TRIM17Q9Y577 477 aa22.32■■□□□ 1.16
PRPF40B-206ENST00000547764 PRDM1O75626 825 aa22.31■■□□□ 1.16
PRPF40B-206ENST00000547764 OSBPP22059 807 aa22.31■■□□□ 1.16
PRPF40B-206ENST00000547764 HOXA7P31268 230 aaPredicted RBP22.31■■□□□ 1.16
PRPF40B-206ENST00000547764 MFAP1P55081 439 aaKnown RBP22.31■■□□□ 1.16
PRPF40B-206ENST00000547764 LACTBP83111 547 aaPredicted RBP22.31■■□□□ 1.16
PRPF40B-206ENST00000547764 PKN2Q16513 984 aaKnown RBP22.31■■□□□ 1.16
PRPF40B-206ENST00000547764 OTOP1Q7RTM1 612 aa22.31■■□□□ 1.16
PRPF40B-206ENST00000547764 ABHD8Q96I13 439 aa22.31■■□□□ 1.16
PRPF40B-206ENST00000547764 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.31■■□□□ 1.16
PRPF40B-206ENST00000547764 ZNF287Q9HBT7 754 aa22.31■■□□□ 1.16
PRPF40B-206ENST00000547764 FGAP02671 866 aa22.3■■□□□ 1.16
PRPF40B-206ENST00000547764 SLC3A2P08195 630 aaKnown RBP22.3■■□□□ 1.16
PRPF40B-206ENST00000547764 ICA1Q05084 483 aa22.3■■□□□ 1.16
PRPF40B-206ENST00000547764 ARHGAP39Q9C0H5 1083 aa22.3■■□□□ 1.16
PRPF40B-206ENST00000547764 KANSL2Q9H9L4 492 aa22.3■■□□□ 1.16
PRPF40B-206ENST00000547764 EFCC1Q9HA90 598 aa22.3■■□□□ 1.16
PRPF40B-206ENST00000547764 IRX3P78415 501 aaPredicted RBP22.29■■□□□ 1.16
PRPF40B-206ENST00000547764 CTDSPL2Q05D32 466 aa22.29■■□□□ 1.16
PRPF40B-206ENST00000547764 PDE4BQ07343 736 aa22.29■■□□□ 1.16
PRPF40B-206ENST00000547764 SKAP1Q86WV1 359 aa22.29■■□□□ 1.16
PRPF40B-206ENST00000547764 ZNF444Q8N0Y2 327 aaPredicted RBP22.29■■□□□ 1.16
PRPF40B-206ENST00000547764 ARHGEF10LQ9HCE6 1279 aa22.29■■□□□ 1.16
PRPF40B-206ENST00000547764 VCAM1P19320 739 aa22.28■■□□□ 1.16
PRPF40B-206ENST00000547764 KIF22Q14807 665 aa22.28■■□□□ 1.16
PRPF40B-206ENST00000547764 ARHGEF6Q15052 776 aa22.28■■□□□ 1.16
PRPF40B-206ENST00000547764 IFFO2Q5TF58 517 aa22.28■■□□□ 1.16
PRPF40B-206ENST00000547764 P2RX7Q99572 595 aaKnown RBP22.28■■□□□ 1.16
PRPF40B-206ENST00000547764 ANAPC4Q9UJX5 808 aa22.28■■□□□ 1.16
PRPF40B-206ENST00000547764 ECM2O94769 699 aaPredicted RBP22.27■■□□□ 1.16
PRPF40B-206ENST00000547764 EEF2P13639 858 aaKnown RBP22.27■■□□□ 1.16
PRPF40B-206ENST00000547764 CTGFP29279 349 aa22.27■■□□□ 1.16
PRPF40B-206ENST00000547764 FBXO46Q6PJ61 603 aaPredicted RBP22.27■■□□□ 1.16
PRPF40B-206ENST00000547764 ANKRD13CQ8N6S4 541 aa22.27■■□□□ 1.16
PRPF40B-206ENST00000547764 INCENPQ9NQS7 918 aa22.27■■□□□ 1.16
PRPF40B-206ENST00000547764 TMX2Q9Y320 296 aa22.27■■□□□ 1.16
PRPF40B-206ENST00000547764 ZMYM6O95789 1325 aa22.27■■□□□ 1.16
PRPF40B-206ENST00000547764 USP17L15C9J2P7 530 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 USP17L13C9JLJ4 530 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 USP17L11C9JVI0 530 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 USP17L18D6R9N7 530 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 USP17L22D6RA61 530 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 USP17L17D6RBQ6 530 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 USP17L19D6RCP7 530 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 USP17L20D6RJB6 530 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 GCLCP48506 637 aaPredicted RBP22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 ATP2B2Q01814 1243 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 USP17L24Q0WX57 530 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 KIAA1755Q5JYT7 1200 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 IL25Q9H293 177 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 SH2D4AQ9H788 454 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 TACC3Q9Y6A5 838 aa22.26■■□□□ 1.15
PRPF40B-206ENST00000547764 GREB1LQ9C091 1923 aaPredicted RBP22.25■■□□□ 1.15
PRPF40B-206ENST00000547764 ZSWIM8A7E2V4 1837 aa22.25■■□□□ 1.15
PRPF40B-206ENST00000547764 CHMLP26374 656 aa22.25■■□□□ 1.15
PRPF40B-206ENST00000547764 PSMC4P43686 418 aa22.25■■□□□ 1.15
PRPF40B-206ENST00000547764 HERVK_113P62684 666 aa22.25■■□□□ 1.15
PRPF40B-206ENST00000547764 FAM47AQ5JRC9 791 aa22.25■■□□□ 1.15
PRPF40B-206ENST00000547764 CATSPERGQ6ZRH7 1159 aa22.25■■□□□ 1.15
PRPF40B-206ENST00000547764 RPAP3Q9H6T3 665 aaPredicted RBP22.25■■□□□ 1.15
PRPF40B-206ENST00000547764 PTPN22Q9Y2R2 807 aa22.25■■□□□ 1.15
PRPF40B-206ENST00000547764 IGKV6D-41A0A0C4DH26 115 aa22.24■■□□□ 1.15
PRPF40B-206ENST00000547764 TSPY3P0CV98 308 aa22.24■■□□□ 1.15
PRPF40B-206ENST00000547764 TSPY8P0CW00 308 aa22.24■■□□□ 1.15
PRPF40B-206ENST00000547764 TFAP4Q01664 338 aa22.24■■□□□ 1.15
PRPF40B-206ENST00000547764 FAM110CQ1W6H9 321 aa22.24■■□□□ 1.15
PRPF40B-206ENST00000547764 NEDD1Q8NHV4 660 aa22.24■■□□□ 1.15
PRPF40B-206ENST00000547764 TRIM47Q96LD4 638 aa22.24■■□□□ 1.15
PRPF40B-206ENST00000547764 VCPKMTQ9H867 229 aa22.24■■□□□ 1.15
PRPF40B-206ENST00000547764 HPS5Q9UPZ3 1129 aa22.24■■□□□ 1.15
PRPF40B-206ENST00000547764 CAPN15O75808 1086 aa22.23■■□□□ 1.15
PRPF40B-206ENST00000547764 FMNL1O95466 1100 aaPredicted RBP22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms