RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 PAK6Q9NQU5 681 aaPredicted RBP16.14■□□□□ 0.17
CPSF6-204ENST00000547486 A0A1W2PRG0 241 aa16.13■□□□□ 0.17
CPSF6-204ENST00000547486 CNMDO75829 334 aa16.13■□□□□ 0.17
CPSF6-204ENST00000547486 MBD4O95243 580 aa16.13■□□□□ 0.17
CPSF6-204ENST00000547486 ERVK-9P63128 1117 aa16.13■□□□□ 0.17
CPSF6-204ENST00000547486 ERVK-24P63145 666 aa16.13■□□□□ 0.17
CPSF6-204ENST00000547486 HABP4Q5JVS0 413 aaKnown RBP16.13■□□□□ 0.17
CPSF6-204ENST00000547486 CATSPERGQ6ZRH7 1159 aa16.13■□□□□ 0.17
CPSF6-204ENST00000547486 SLC44A5Q8NCS7 719 aa16.13■□□□□ 0.17
CPSF6-204ENST00000547486 FEZ1Q99689 392 aa16.13■□□□□ 0.17
CPSF6-204ENST00000547486 PAGR1Q9BTK6 254 aa16.13■□□□□ 0.17
CPSF6-204ENST00000547486 DCTPP1Q9H773 170 aa16.13■□□□□ 0.17
CPSF6-204ENST00000547486 CABP5Q9NP86 173 aa16.13■□□□□ 0.17
CPSF6-204ENST00000547486 MYH1P12882 1939 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 CYP2D7A0A087X1C5 515 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 USP17L15C9J2P7 530 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 USP17L13C9JLJ4 530 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 USP17L11C9JVI0 530 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 USP17L18D6R9N7 530 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 USP17L22D6RA61 530 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 USP17L17D6RBQ6 530 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 USP17L19D6RCP7 530 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 USP17L20D6RJB6 530 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 TFRCP02786 760 aaKnown RBP16.12■□□□□ 0.17
CPSF6-204ENST00000547486 VCAM1P19320 739 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 CYP2B6P20813 491 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 USP14P54578 494 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 USP17L24Q0WX57 530 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 UBE3CQ15386 1083 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 SIAH1Q8IUQ4 282 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 DPF3Q92784 378 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 GCC1Q96CN9 775 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 CRISPLD2Q9H0B8 497 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 DOCK3Q8IZD9 2030 aa16.12■□□□□ 0.17
CPSF6-204ENST00000547486 MPHOSPH10O00566 681 aaKnown RBP16.11■□□□□ 0.17
CPSF6-204ENST00000547486 HMGCRP04035 888 aa16.11■□□□□ 0.17
CPSF6-204ENST00000547486 KIAA1755Q5JYT7 1200 aa16.11■□□□□ 0.17
CPSF6-204ENST00000547486 TRIB2Q92519 343 aa16.11■□□□□ 0.17
CPSF6-204ENST00000547486 USP6NLQ92738 828 aa16.11■□□□□ 0.17
CPSF6-204ENST00000547486 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.11■□□□□ 0.174e-9■■□□□ 12
CPSF6-204ENST00000547486 PUS7LQ9H0K6 701 aaKnown RBP16.11■□□□□ 0.17
CPSF6-204ENST00000547486 ATP8A2Q9NTI2 1148 aa16.11■□□□□ 0.17
CPSF6-204ENST00000547486 ECHDC1Q9NTX5 307 aa16.11■□□□□ 0.17
CPSF6-204ENST00000547486 COLQQ9Y215 455 aaPredicted RBP16.11■□□□□ 0.17
CPSF6-204ENST00000547486 USP17L12C9JPN9 530 aa16.1■□□□□ 0.17
CPSF6-204ENST00000547486 USP17L21D6R901 530 aa16.1■□□□□ 0.17
CPSF6-204ENST00000547486 FARP2O94887 1054 aaPredicted RBP16.1■□□□□ 0.17
CPSF6-204ENST00000547486 MAPK4P31152 587 aa16.1■□□□□ 0.17
CPSF6-204ENST00000547486 C12orf60Q5U649 245 aa16.1■□□□□ 0.17
CPSF6-204ENST00000547486 TSHZ3Q63HK5 1081 aa16.1■□□□□ 0.17
CPSF6-204ENST00000547486 GPR142Q7Z601 462 aa16.1■□□□□ 0.17
CPSF6-204ENST00000547486 NUDT12Q9BQG2 462 aa16.1■□□□□ 0.17
CPSF6-204ENST00000547486 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.1■□□□□ 0.17
CPSF6-204ENST00000547486 RPAP3Q9H6T3 665 aaPredicted RBP16.1■□□□□ 0.17
CPSF6-204ENST00000547486 BTBD7Q9P203 1132 aa16.1■□□□□ 0.17
CPSF6-204ENST00000547486 RABGAP1Q9Y3P9 1069 aa16.1■□□□□ 0.17
CPSF6-204ENST00000547486 PCDHB15Q9Y5E8 787 aa16.1■□□□□ 0.17
CPSF6-204ENST00000547486 DDX60LQ5H9U9 1706 aaKnown RBP16.09■□□□□ 0.17
CPSF6-204ENST00000547486 XRCC5P13010 732 aaKnown RBP16.09■□□□□ 0.17
CPSF6-204ENST00000547486 AKR1B1P15121 316 aa16.09■□□□□ 0.17
CPSF6-204ENST00000547486 MORN1Q5T089 497 aa16.09■□□□□ 0.17
CPSF6-204ENST00000547486 PLEKHH3Q7Z736 793 aa16.09■□□□□ 0.17
CPSF6-204ENST00000547486 CLEC10AQ8IUN9 316 aa16.09■□□□□ 0.17
CPSF6-204ENST00000547486 GTF3C2Q8WUA4 911 aaPredicted RBP16.09■□□□□ 0.17
CPSF6-204ENST00000547486 SWAP70Q9UH65 585 aa16.09■□□□□ 0.17
CPSF6-204ENST00000547486 SLC4A4Q9Y6R1 1079 aa16.09■□□□□ 0.17
CPSF6-204ENST00000547486 RPTORQ8N122 1335 aa16.09■□□□□ 0.17
CPSF6-204ENST00000547486 CDK8P49336 464 aa16.08■□□□□ 0.16
CPSF6-204ENST00000547486 CCL14Q16627 93 aa16.08■□□□□ 0.16
CPSF6-204ENST00000547486 MAP3K21Q5TCX8 1036 aa16.08■□□□□ 0.16
CPSF6-204ENST00000547486 CTR9Q6PD62 1173 aa16.08■□□□□ 0.16
CPSF6-204ENST00000547486 LBX2Q6XYB7 198 aa16.08■□□□□ 0.16
CPSF6-204ENST00000547486 DIS3LQ8TF46 1054 aaKnown RBP16.08■□□□□ 0.16
CPSF6-204ENST00000547486 SOCS4Q8WXH5 440 aa16.08■□□□□ 0.16
CPSF6-204ENST00000547486 HMX1Q9NP08 348 aaPredicted RBP16.08■□□□□ 0.16
CPSF6-204ENST00000547486 SPDYE16A6NNV3 312 aaPredicted RBP16.07■□□□□ 0.16
CPSF6-204ENST00000547486 MNX1P50219 401 aaPredicted RBP16.07■□□□□ 0.16
CPSF6-204ENST00000547486 ZSCAN25Q6NSZ9 544 aa16.07■□□□□ 0.16
CPSF6-204ENST00000547486 TMEM179Q6ZVK1 233 aa16.07■□□□□ 0.16
CPSF6-204ENST00000547486 CCAR1Q8IX12 1150 aaKnown RBP16.07■□□□□ 0.16
CPSF6-204ENST00000547486 PAWRQ96IZ0 340 aaKnown RBP16.07■□□□□ 0.16
CPSF6-204ENST00000547486 STRBPQ96SI9 672 aaKnown RBP16.07■□□□□ 0.16
CPSF6-204ENST00000547486 HTATIP2Q9BUP3 242 aa16.07■□□□□ 0.16
CPSF6-204ENST00000547486 PLXNB2O15031 1838 aa16.07■□□□□ 0.16
CPSF6-204ENST00000547486 PRKAR2AP13861 404 aaKnown RBP16.06■□□□□ 0.16
CPSF6-204ENST00000547486 CACNB2Q08289 660 aaPredicted RBP16.06■□□□□ 0.16
CPSF6-204ENST00000547486 COG2Q14746 738 aa16.06■□□□□ 0.16
CPSF6-204ENST00000547486 C16orf86Q6ZW13 317 aa16.06■□□□□ 0.16
CPSF6-204ENST00000547486 KBTBD3Q8NAB2 608 aa16.06■□□□□ 0.16
CPSF6-204ENST00000547486 OSBP2Q969R2 916 aa16.06■□□□□ 0.16
CPSF6-204ENST00000547486 GSG1L2A8MUP6 293 aa16.05■□□□□ 0.16
CPSF6-204ENST00000547486 CAPN2P17655 700 aa16.05■□□□□ 0.16
CPSF6-204ENST00000547486 PTPREP23469 700 aa16.05■□□□□ 0.16
CPSF6-204ENST00000547486 RGS2P41220 211 aa16.05■□□□□ 0.16
CPSF6-204ENST00000547486 CCNA1P78396 465 aa16.05■□□□□ 0.16
CPSF6-204ENST00000547486 SPICE1Q8N0Z3 855 aa16.05■□□□□ 0.16
CPSF6-204ENST00000547486 OTUD7AQ8TE49 926 aaPredicted RBP16.05■□□□□ 0.16
CPSF6-204ENST00000547486 CCDC17Q96LX7 622 aa16.05■□□□□ 0.16
CPSF6-204ENST00000547486 HOXC10Q9NYD6 342 aa16.05■□□□□ 0.16
CPSF6-204ENST00000547486 FLRT1Q9NZU1 646 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms