RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 KIAA1683Q9H0B3 1180 aa14.21□□□□□ -0.13
YBX3-217ENST00000546164 HELLSQ9NRZ9 838 aa14.21□□□□□ -0.13
YBX3-217ENST00000546164 TMOD4Q9NZQ9 345 aa14.21□□□□□ -0.13
YBX3-217ENST00000546164 PNMA3Q9UL41 463 aa14.21□□□□□ -0.13
YBX3-217ENST00000546164 TRIM17Q9Y577 477 aa14.21□□□□□ -0.13
YBX3-217ENST00000546164 BAZ2AQ9UIF9 1905 aaKnown RBP14.21□□□□□ -0.14
YBX3-217ENST00000546164 PDE4AP27815 886 aa14.2□□□□□ -0.14
YBX3-217ENST00000546164 USP14P54578 494 aa14.2□□□□□ -0.14
YBX3-217ENST00000546164 RAB3GAP1Q15042 981 aa14.2□□□□□ -0.14
YBX3-217ENST00000546164 USP17L2Q6R6M4 530 aa14.2□□□□□ -0.14
YBX3-217ENST00000546164 IFNL3Q8IZI9 196 aa14.2□□□□□ -0.14
YBX3-217ENST00000546164 NACAP1Q9BZK3 213 aa14.2□□□□□ -0.14
YBX3-217ENST00000546164 EFCC1Q9HA90 598 aa14.2□□□□□ -0.14
YBX3-217ENST00000546164 EMILIN3Q9NT22 766 aa14.2□□□□□ -0.14
YBX3-217ENST00000546164 CPA4Q9UI42 421 aa14.2□□□□□ -0.14
YBX3-217ENST00000546164 TRIM6-TRIM34B2RNG4 842 aa14.19□□□□□ -0.14
YBX3-217ENST00000546164 FOXP2O15409 715 aa14.19□□□□□ -0.14
YBX3-217ENST00000546164 GNRH1P01148 92 aa14.19□□□□□ -0.14
YBX3-217ENST00000546164 OSBPP22059 807 aa14.19□□□□□ -0.14
YBX3-217ENST00000546164 TDO2P48775 406 aa14.19□□□□□ -0.14
YBX3-217ENST00000546164 SEPT2Q15019 361 aa14.19□□□□□ -0.14
YBX3-217ENST00000546164 ACER1Q8TDN7 264 aa14.19□□□□□ -0.14
YBX3-217ENST00000546164 SMCR8Q8TEV9 937 aaPredicted RBP14.19□□□□□ -0.14
YBX3-217ENST00000546164 ASCC2Q9H1I8 757 aaPredicted RBP14.19□□□□□ -0.14
YBX3-217ENST00000546164 HPS5Q9UPZ3 1129 aa14.19□□□□□ -0.14
YBX3-217ENST00000546164 A0A0D9SFI3 127 aa14.18□□□□□ -0.14
YBX3-217ENST00000546164 MPHOSPH10O00566 681 aaKnown RBP14.18□□□□□ -0.14
YBX3-217ENST00000546164 APPP05067 770 aa14.18□□□□□ -0.14
YBX3-217ENST00000546164 AKR1B1P15121 316 aa14.18□□□□□ -0.14
YBX3-217ENST00000546164 GCLCP48506 637 aaPredicted RBP14.18□□□□□ -0.14
YBX3-217ENST00000546164 KIF22Q14807 665 aa14.18□□□□□ -0.14
YBX3-217ENST00000546164 FAM110CQ1W6H9 321 aa14.18□□□□□ -0.14
YBX3-217ENST00000546164 MCMDC2Q4G0Z9 681 aa14.18□□□□□ -0.14
YBX3-217ENST00000546164 FAM227BQ96M60 508 aa14.18□□□□□ -0.14
YBX3-217ENST00000546164 FEZ1Q99689 392 aa14.18□□□□□ -0.14
YBX3-217ENST00000546164 PTPN22Q9Y2R2 807 aa14.18□□□□□ -0.14
YBX3-217ENST00000546164 MINDY4BA8MYZ0 360 aa14.17□□□□□ -0.14
YBX3-217ENST00000546164 SDSP20132 328 aa14.17□□□□□ -0.14
YBX3-217ENST00000546164 PRMT2P55345 433 aa14.17□□□□□ -0.14
YBX3-217ENST00000546164 ALX1Q15699 326 aa14.17□□□□□ -0.14
YBX3-217ENST00000546164 CCDC129Q6ZRS4 1044 aa14.17□□□□□ -0.14
YBX3-217ENST00000546164 SIAH1Q8IUQ4 282 aa14.17□□□□□ -0.14
YBX3-217ENST00000546164 RILPL2Q969X0 211 aa14.17□□□□□ -0.14
YBX3-217ENST00000546164 NAPBQ9H115 298 aa14.17□□□□□ -0.14
YBX3-217ENST00000546164 ZNF287Q9HBT7 754 aa14.17□□□□□ -0.14
YBX3-217ENST00000546164 A0A1W2PRG0 241 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 HIP1O00291 1037 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 VCAM1P19320 739 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 RASA1P20936 1047 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 CTGFP29279 349 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 IRX3P78415 501 aaPredicted RBP14.16□□□□□ -0.14
YBX3-217ENST00000546164 ICA1Q05084 483 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 NMIQ13287 307 aaPredicted RBP14.16□□□□□ -0.14
YBX3-217ENST00000546164 TTC22Q5TAA0 569 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 VPS53Q5VIR6 699 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 TRIM47Q96LD4 638 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.16□□□□□ -0.14
YBX3-217ENST00000546164 ARHGAP39Q9C0H5 1083 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 SH2D4AQ9H788 454 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 KANSL2Q9H9L4 492 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 MORF4L1Q9UBU8 362 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 TMX2Q9Y320 296 aa14.16□□□□□ -0.14
YBX3-217ENST00000546164 ZMYM6O95789 1325 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 USP17L15C9J2P7 530 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 USP17L13C9JLJ4 530 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 USP17L11C9JVI0 530 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 USP17L18D6R9N7 530 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 USP17L22D6RA61 530 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 USP17L17D6RBQ6 530 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 USP17L19D6RCP7 530 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 USP17L20D6RJB6 530 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 PSMC4P43686 418 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 HERVK_113P62684 666 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 PPARAQ07869 468 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 USP17L24Q0WX57 530 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 ZNF589Q86UQ0 364 aaPredicted RBP14.15□□□□□ -0.14
YBX3-217ENST00000546164 GTF3C2Q8WUA4 911 aaPredicted RBP14.15□□□□□ -0.14
YBX3-217ENST00000546164 P2RX7Q99572 595 aaKnown RBP14.15□□□□□ -0.14
YBX3-217ENST00000546164 MKNK2Q9HBH9 465 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 ARHGEF10LQ9HCE6 1279 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 ANAPC4Q9UJX5 808 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 CENPFP49454 3210 aa14.15□□□□□ -0.14
YBX3-217ENST00000546164 CCDC171Q6TFL3 1326 aa14.15□□□□□ -0.15
YBX3-217ENST00000546164 CCDC85CA6NKD9 419 aa14.14□□□□□ -0.15
YBX3-217ENST00000546164 SLC3A2P08195 630 aaKnown RBP14.14□□□□□ -0.15
YBX3-217ENST00000546164 GSPT1P15170 499 aaKnown RBP14.14□□□□□ -0.15
YBX3-217ENST00000546164 HOXD10P28358 340 aa14.14□□□□□ -0.15
YBX3-217ENST00000546164 MFAP1P55081 439 aaKnown RBP14.14□□□□□ -0.15
YBX3-217ENST00000546164 FCGRTP55899 365 aa14.14□□□□□ -0.15
YBX3-217ENST00000546164 PDE4BQ07343 736 aa14.14□□□□□ -0.15
YBX3-217ENST00000546164 CATSPERGQ6ZRH7 1159 aa14.14□□□□□ -0.15
YBX3-217ENST00000546164 ANKRD13CQ8N6S4 541 aa14.14□□□□□ -0.15
YBX3-217ENST00000546164 LPAR1Q92633 364 aa14.14□□□□□ -0.15
YBX3-217ENST00000546164 DIAPH3Q9NSV4 1193 aa14.14□□□□□ -0.15
YBX3-217ENST00000546164 SRRDQ9UH36 339 aa14.14□□□□□ -0.15
YBX3-217ENST00000546164 MYH8P13535 1937 aa14.13□□□□□ -0.15
YBX3-217ENST00000546164 GREB1LQ9C091 1923 aaPredicted RBP14.13□□□□□ -0.15
YBX3-217ENST00000546164 PLIN4Q96Q06 1357 aa14.13□□□□□ -0.15
YBX3-217ENST00000546164 IGKV6D-41A0A0C4DH26 115 aa14.13□□□□□ -0.15
YBX3-217ENST00000546164 FMNL1O95466 1100 aaPredicted RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms