RNA–Protein interactions for RNA: ENST00000546080.5

SRP54-202, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 2,187 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-202ENST00000546080 ARHGAP25P42331 645 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 AKAP17AQ02040 695 aaKnown RBP16.07■□□□□ 0.16
SRP54-202ENST00000546080 RTN1Q16799 776 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 CTCFLQ8NI51 663 aaPredicted RBP16.07■□□□□ 0.16
SRP54-202ENST00000546080 VIPAS39Q9H9C1 493 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 STRN4Q9NRL3 753 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 ZNF532Q9HCE3 1301 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 DEXIO95424 95 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 A1BGP04217 495 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 UBE3CQ15386 1083 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 MAP9Q49MG5 647 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 KRT28Q7Z3Y7 464 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 PPM1EQ8WY54 764 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 NUP88Q99567 741 aaPredicted RBP16.07■□□□□ 0.16
SRP54-202ENST00000546080 INCENPQ9NQS7 918 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 AATFQ9NY61 560 aaKnown RBP eCLIP16.07■□□□□ 0.16
SRP54-202ENST00000546080 ZSWIM5Q9P217 1185 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 PKD1L3Q7Z443 1732 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 MST1RQ04912 1400 aa16.07■□□□□ 0.16
SRP54-202ENST00000546080 MYO5AQ9Y4I1 1855 aaKnown RBP16.06■□□□□ 0.16
SRP54-202ENST00000546080 NID2Q14112 1375 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 MCM3P25205 808 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 CASP1P29466 404 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 GTF2A1P52655 376 aaPredicted RBP16.06■□□□□ 0.16
SRP54-202ENST00000546080 CORO7P57737 925 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 AMPD2Q01433 879 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 METTL24Q5JXM2 366 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 ICE2Q659A1 982 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 PACS2Q86VP3 889 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 SMYD4Q8IYR2 804 aaPredicted RBP16.06■□□□□ 0.16
SRP54-202ENST00000546080 AIDAQ96BJ3 306 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 PAGE5Q96GU1 130 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 CABP5Q9NP86 173 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 CTNND2Q9UQB3 1225 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 TRPM3Q9HCF6 1732 aaPredicted RBP16.06■□□□□ 0.16
SRP54-202ENST00000546080 A0A087X0B3 334 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 N4BP3O15049 544 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 AARSP49588 968 aaKnown RBP eCLIP16.06■□□□□ 0.16
SRP54-202ENST00000546080 IRX3P78415 501 aaPredicted RBP16.06■□□□□ 0.16
SRP54-202ENST00000546080 IFIT5Q13325 482 aaKnown RBP16.06■□□□□ 0.16
SRP54-202ENST00000546080 TRIM14Q14142 442 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 CCDC82Q8N4S0 544 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 GSDMAQ96QA5 445 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 SLF1Q9BQI6 1058 aa16.06■□□□□ 0.16
SRP54-202ENST00000546080 PIH1D3Q9NQM4 214 aaKnown RBP16.06■□□□□ 0.16
SRP54-202ENST00000546080 PPP1R3GB7ZBB8 358 aa16.05■□□□□ 0.16
SRP54-202ENST00000546080 PPFIA4O75335 1185 aa16.05■□□□□ 0.16
SRP54-202ENST00000546080 CTDSPL2Q05D32 466 aa16.05■□□□□ 0.16
SRP54-202ENST00000546080 KRT31Q15323 416 aa16.05■□□□□ 0.16
SRP54-202ENST00000546080 SH3RF1Q7Z6J0 888 aa16.05■□□□□ 0.16
SRP54-202ENST00000546080 EPSTI1Q96J88 318 aa16.05■□□□□ 0.16
SRP54-202ENST00000546080 NAPBQ9H115 298 aa16.05■□□□□ 0.16
SRP54-202ENST00000546080 CNNM2Q9H8M5 875 aa16.05■□□□□ 0.16
SRP54-202ENST00000546080 RNF216Q9NWF9 866 aaPredicted RBP16.05■□□□□ 0.16
SRP54-202ENST00000546080 RIC1Q4ADV7 1423 aa16.05■□□□□ 0.16
SRP54-202ENST00000546080 LRP6O75581 1613 aa16.05■□□□□ 0.16
SRP54-202ENST00000546080 SYF2O95926 243 aaKnown RBP16.04■□□□□ 0.16
SRP54-202ENST00000546080 PDE6AP16499 860 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 USP14P54578 494 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 DPYDQ12882 1025 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 CERS3Q8IU89 383 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 OXER1Q8TDS5 423 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 PLEKHA4Q9H4M7 779 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 TRIM75PA6NK02 468 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 ALX1Q15699 326 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 TRAPPC11Q7Z392 1133 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 ANKRD20A12PQ8NF67 263 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 SYMPKQ92797 1274 aaKnown RBP16.04■□□□□ 0.16
SRP54-202ENST00000546080 STRBPQ96SI9 672 aaKnown RBP16.04■□□□□ 0.16
SRP54-202ENST00000546080 KRT23Q9C075 422 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 VPS16Q9H269 839 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 LIMA1Q9UHB6 759 aaKnown RBP16.04■□□□□ 0.16
SRP54-202ENST00000546080 GUCA1BQ9UMX6 200 aa16.04■□□□□ 0.16
SRP54-202ENST00000546080 CCDC196A0A1B0GTZ2 297 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 CDC25AP30304 524 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 KRT9P35527 623 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 SPAG1Q07617 926 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 WTAPQ15007 396 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 SART3Q15020 963 aaKnown RBP16.03■□□□□ 0.16
SRP54-202ENST00000546080 ANKLE2Q86XL3 938 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 EFCAB13Q8IY85 973 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 CMTR1Q8N1G2 835 aaKnown RBP16.03■□□□□ 0.16
SRP54-202ENST00000546080 CRACR2BQ8N4Y2 399 aaPredicted RBP16.03■□□□□ 0.16
SRP54-202ENST00000546080 ISCA1Q9BUE6 129 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 HPCAL4Q9UM19 191 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 JRKLQ9Y4A0 524 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 ANKRD65E5RJM6 399 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 PRPF6O94906 941 aaKnown RBP16.03■□□□□ 0.16
SRP54-202ENST00000546080 COPB1P53618 953 aaKnown RBP16.03■□□□□ 0.16
SRP54-202ENST00000546080 RRP12Q5JTH9 1297 aaKnown RBP16.03■□□□□ 0.16
SRP54-202ENST00000546080 IFNL3Q8IZI9 196 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 SMARCC1Q92922 1105 aaPredicted RBP16.03■□□□□ 0.16
SRP54-202ENST00000546080 ZNF512BQ96KM6 892 aaPredicted RBP16.03■□□□□ 0.16
SRP54-202ENST00000546080 ZKSCAN3Q9BRR0 538 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 EPB41L4AQ9HCS5 686 aaPredicted RBP16.03■□□□□ 0.16
SRP54-202ENST00000546080 TOMM22Q9NS69 142 aa16.03■□□□□ 0.16
SRP54-202ENST00000546080 ERICH2A1L162 156 aa16.02■□□□□ 0.16
SRP54-202ENST00000546080 PATL2C9JE40 543 aaKnown RBP16.02■□□□□ 0.16
SRP54-202ENST00000546080 RNF225M0QZC1 329 aaPredicted RBP16.02■□□□□ 0.16
SRP54-202ENST00000546080 COBLO75128 1261 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms