RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 HIBADHP31937 336 aaKnown RBP7.29□□□□□ -1.24
SYNE1-239ENST00000545694 CLK2P49760 499 aaKnown RBP7.29□□□□□ -1.24
SYNE1-239ENST00000545694 TUSC1Q2TAM9 212 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 FAM182BQ5T319 152 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 PRR5LQ6MZQ0 368 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 CCDC129Q6ZRS4 1044 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 RALYLQ86SE5 291 aaKnown RBP7.29□□□□□ -1.24
SYNE1-239ENST00000545694 WDR66Q8TBY9 1149 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 CELF1Q92879 486 aaKnown RBP7.29□□□□□ -1.24
SYNE1-239ENST00000545694 TMEM87BQ96K49 555 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 FAM84BQ96KN1 310 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-239ENST00000545694 STRBPQ96SI9 672 aaKnown RBP7.29□□□□□ -1.24
SYNE1-239ENST00000545694 KRT23Q9C075 422 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 PUS7LQ9H0K6 701 aaKnown RBP7.29□□□□□ -1.24
SYNE1-239ENST00000545694 RNF41Q9H4P4 317 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-239ENST00000545694 PIH1D3Q9NQM4 214 aaKnown RBP7.29□□□□□ -1.24
SYNE1-239ENST00000545694 PODXL2Q9NZ53 605 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 LRP2BPQ9P2M1 347 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 DNMT3LQ9UJW3 386 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 NDUFB9Q9Y6M9 179 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 LRRC37AA6NMS7 1700 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 TNS1Q9HBL0 1735 aaKnown RBP7.29□□□□□ -1.24
SYNE1-239ENST00000545694 TNRC6CQ9HCJ0 1690 aaKnown RBP7.28□□□□□ -1.24
SYNE1-239ENST00000545694 CACNA1SQ13698 1873 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 TIAM2Q8IVF5 1701 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 FIGNL2A6NMB9 653 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 PFKFB2O60825 505 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 VSIG8P0DPA2 414 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 ZSCAN22P10073 491 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-239ENST00000545694 RCAN1P53805 252 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 KCNQ4P56696 695 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 GSTO1P78417 241 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 CTDSPL2Q05D32 466 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 TOB2Q14106 344 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-239ENST00000545694 PPP2R5BQ15173 497 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 ME3Q16798 604 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 KLHL40Q2TBA0 621 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 Q6ZUG5 572 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 ZNF804AQ7Z570 1209 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 TMTC2Q8N394 836 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 MAGEB6Q8N7X4 407 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 GTF3C6Q969F1 213 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 BRIP1Q9BX63 1249 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 NAPBQ9H115 298 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 TPCN1Q9ULQ1 816 aa7.28□□□□□ -1.24
SYNE1-239ENST00000545694 POLRMTO00411 1230 aaKnown RBP7.27□□□□□ -1.25
SYNE1-239ENST00000545694 APBA3O96018 575 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 LDHCP07864 332 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 NCLP19338 710 aaKnown RBP7.27□□□□□ -1.25
SYNE1-239ENST00000545694 SYT1P21579 422 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 GJB2P29033 226 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 ALDH1B1P30837 517 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 PDE6BP35913 854 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 L1TD1Q5T7N2 865 aaKnown RBP7.27□□□□□ -1.25
SYNE1-239ENST00000545694 ATL3Q6DD88 541 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 PI16Q6UXB8 463 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 CCDC83Q8IWF9 413 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 MB21D2Q8IYB1 491 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-239ENST00000545694 TRMT44Q8IYL2 757 aaKnown RBP7.27□□□□□ -1.25
SYNE1-239ENST00000545694 CCDC116Q8IYX3 515 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 TMEM87AQ8NBN3 555 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 SYAP1Q96A49 352 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-239ENST00000545694 TMX4Q9H1E5 349 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-239ENST00000545694 TFCP2L1Q9NZI6 479 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 ANKIB1Q9P2G1 1089 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 ANAPC4Q9UJX5 808 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 WWC3Q9ULE0 1092 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 SUGT1Q9Y2Z0 365 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 ZDHHC9Q9Y397 364 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 MAP4K5Q9Y4K4 846 aa7.27□□□□□ -1.25
SYNE1-239ENST00000545694 CDKL5O76039 1030 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 MBD4O95243 580 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 F13A1P00488 732 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 APPP05067 770 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 SLC3A2P08195 630 aaKnown RBP7.26□□□□□ -1.25
SYNE1-239ENST00000545694 NPR1P16066 1061 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 CYP7A1P22680 504 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 LIFRP42702 1097 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 CBLBQ13191 982 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 SART3Q15020 963 aaKnown RBP7.26□□□□□ -1.25
SYNE1-239ENST00000545694 LARP1BQ659C4 914 aaKnown RBP7.26□□□□□ -1.25
SYNE1-239ENST00000545694 NAA16Q6N069 864 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-239ENST00000545694 CPLX2Q6PUV4 134 aaKnown RBP7.26□□□□□ -1.25
SYNE1-239ENST00000545694 STOX1Q6ZVD7 989 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 NOL8Q76FK4 1167 aaKnown RBP7.26□□□□□ -1.25
SYNE1-239ENST00000545694 SP8Q8IXZ3 490 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 IFNL3Q8IZI9 196 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 TDRD7Q8NHU6 1098 aaKnown RBP7.26□□□□□ -1.25
SYNE1-239ENST00000545694 SMARCC2Q8TAQ2 1214 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 TBC1D22AQ8WUA7 517 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 STAG1Q8WVM7 1258 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 BRF1Q92994 677 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 TSEN34Q9BSV6 310 aaKnown RBP7.26□□□□□ -1.25
SYNE1-239ENST00000545694 ZSCAN16Q9H4T2 348 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-239ENST00000545694 ATP8A2Q9NTI2 1148 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 RAI14Q9P0K7 980 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 GGA1Q9UJY5 639 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 MYH2Q9UKX2 1941 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 MYH15Q9Y2K3 1946 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 ANKRD31Q8N7Z5 1873 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms