RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ZNF830Q96NB3 372 aaPredicted RBP16.58■□□□□ 0.25
VPS33A-209ENST00000544349 AIFM3Q96NN9 605 aa16.58■□□□□ 0.25
VPS33A-209ENST00000544349 ZNF277Q9NRM2 450 aaPredicted RBP16.58■□□□□ 0.25
VPS33A-209ENST00000544349 GJB4Q9NTQ9 266 aa16.58■□□□□ 0.25
VPS33A-209ENST00000544349 MRVI1Q9Y6F6 885 aa16.58■□□□□ 0.25
VPS33A-209ENST00000544349 TSPY3P0CV98 308 aa16.58■□□□□ 0.24
VPS33A-209ENST00000544349 TSPY8P0CW00 308 aa16.58■□□□□ 0.24
VPS33A-209ENST00000544349 MAP3K11Q16584 847 aa16.58■□□□□ 0.24
VPS33A-209ENST00000544349 CCDC178Q5BJE1 867 aa16.58■□□□□ 0.24
VPS33A-209ENST00000544349 LARGE2Q8N3Y3 721 aa16.58■□□□□ 0.24
VPS33A-209ENST00000544349 CRACR2BQ8N4Y2 399 aaPredicted RBP16.58■□□□□ 0.24
VPS33A-209ENST00000544349 ANKS1AQ92625 1134 aa16.58■□□□□ 0.24
VPS33A-209ENST00000544349 SERPINA10Q9UK55 444 aa16.58■□□□□ 0.24
VPS33A-209ENST00000544349 BRCA1P38398 1863 aaKnown RBP16.57■□□□□ 0.24
VPS33A-209ENST00000544349 NR1I2O75469 434 aa16.57■□□□□ 0.24
VPS33A-209ENST00000544349 SGIP1Q9BQI5 828 aa16.57■□□□□ 0.24
VPS33A-209ENST00000544349 OSBPL5Q9H0X9 879 aaPredicted RBP16.57■□□□□ 0.24
VPS33A-209ENST00000544349 RBM28Q9NW13 759 aaKnown RBP16.57■□□□□ 0.24
VPS33A-209ENST00000544349 PCDHAC2Q9Y5I4 1007 aa16.57■□□□□ 0.24
VPS33A-209ENST00000544349 CCDC192P0DO97 292 aa16.57■□□□□ 0.24
VPS33A-209ENST00000544349 RBM5P52756 815 aaKnown RBP eCLIP16.57■□□□□ 0.24
VPS33A-209ENST00000544349 CEBPZQ03701 1054 aaKnown RBP16.57■□□□□ 0.24
VPS33A-209ENST00000544349 TYRO3Q06418 890 aa16.57■□□□□ 0.24
VPS33A-209ENST00000544349 DALRD3Q5D0E6 543 aaKnown RBP16.57■□□□□ 0.24
VPS33A-209ENST00000544349 TRIM22Q8IYM9 498 aa16.57■□□□□ 0.24
VPS33A-209ENST00000544349 CMTR1Q8N1G2 835 aaKnown RBP16.57■□□□□ 0.24
VPS33A-209ENST00000544349 WASF1Q92558 559 aa16.57■□□□□ 0.24
VPS33A-209ENST00000544349 COL4A5P29400 1685 aa16.56■□□□□ 0.24
VPS33A-209ENST00000544349 UBE2Q2LH0YL09 131 aa16.56■□□□□ 0.24
VPS33A-209ENST00000544349 GABPAQ06546 454 aa16.56■□□□□ 0.24
VPS33A-209ENST00000544349 CCDC82Q8N4S0 544 aa16.56■□□□□ 0.24
VPS33A-209ENST00000544349 BICD2Q8TD16 824 aa16.56■□□□□ 0.24
VPS33A-209ENST00000544349 CLSTN2Q9H4D0 955 aa16.56■□□□□ 0.24
VPS33A-209ENST00000544349 CFAP45Q9UL16 551 aa16.56■□□□□ 0.24
VPS33A-209ENST00000544349 PLCB2Q00722 1185 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 NFIAQ12857 509 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 KRT40Q6A162 431 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 NEDD1Q8NHV4 660 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 TNMDQ9H2S6 317 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 TTC12Q9H892 705 aaPredicted RBP16.55■□□□□ 0.24
VPS33A-209ENST00000544349 KAT14Q9H8E8 782 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 PPP1R1BQ9UD71 204 aaPredicted RBP16.55■□□□□ 0.24
VPS33A-209ENST00000544349 GOLGA6L4A6NEF3 574 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 DEXIO95424 95 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 GUCY1A2P33402 732 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 FUT2Q10981 343 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 ATL3Q6DD88 541 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 RSBN1LQ6PCB5 846 aaPredicted RBP16.55■□□□□ 0.24
VPS33A-209ENST00000544349 RBM43Q6ZSC3 357 aaKnown RBP16.55■□□□□ 0.24
VPS33A-209ENST00000544349 RNF26Q9BY78 433 aaPredicted RBP16.55■□□□□ 0.24
VPS33A-209ENST00000544349 R3HCC1Q9Y3T6 440 aaKnown RBP16.55■□□□□ 0.24
VPS33A-209ENST00000544349 MYO3BQ8WXR4 1341 aa16.55■□□□□ 0.24
VPS33A-209ENST00000544349 MYH6P13533 1939 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 VIL1P09327 827 aaKnown RBP16.54■□□□□ 0.24
VPS33A-209ENST00000544349 KIF23Q02241 960 aaPredicted RBP16.54■□□□□ 0.24
VPS33A-209ENST00000544349 CTCFLQ8NI51 663 aaPredicted RBP16.54■□□□□ 0.24
VPS33A-209ENST00000544349 FAM200AQ8TCP9 573 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 ZNF396Q96N95 335 aaPredicted RBP16.54■□□□□ 0.24
VPS33A-209ENST00000544349 IDI2Q9BXS1 227 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 DDX19AQ9NUU7 478 aaKnown RBP16.54■□□□□ 0.24
VPS33A-209ENST00000544349 CD2APQ9Y5K6 639 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 FER1L6Q2WGJ9 1857 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 PSMD14O00487 310 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 RAD17O75943 681 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 PLEKHA8P1O95397 391 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 TRIM29Q14134 588 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 TMTC3Q6ZXV5 915 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 BRAPQ7Z569 592 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 LUZP1Q86V48 1076 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 KLHL34Q8N239 644 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 C17orf53Q8N3J3 647 aaPredicted RBP16.54■□□□□ 0.24
VPS33A-209ENST00000544349 PNMA1Q8ND90 353 aa16.54■□□□□ 0.24
VPS33A-209ENST00000544349 KIF28PB7ZC32 967 aa16.53■□□□□ 0.24
VPS33A-209ENST00000544349 PRPF3O43395 683 aaKnown RBP16.53■□□□□ 0.24
VPS33A-209ENST00000544349 CFAP100Q494V2 611 aa16.53■□□□□ 0.24
VPS33A-209ENST00000544349 ANO6Q4KMQ2 910 aa16.53■□□□□ 0.24
VPS33A-209ENST00000544349 USP28Q96RU2 1077 aa16.53■□□□□ 0.24
VPS33A-209ENST00000544349 MAP3K14Q99558 947 aa16.53■□□□□ 0.24
VPS33A-209ENST00000544349 SWAP70Q9UH65 585 aa16.53■□□□□ 0.24
VPS33A-209ENST00000544349 SERPINB13Q9UIV8 391 aa16.53■□□□□ 0.24
VPS33A-209ENST00000544349 ZNRF3Q9ULT6 936 aa16.53■□□□□ 0.24
VPS33A-209ENST00000544349 PSDA5PKW4 1024 aaPredicted RBP16.52■□□□□ 0.24
VPS33A-209ENST00000544349 NPM3O75607 178 aaKnown RBP16.52■□□□□ 0.24
VPS33A-209ENST00000544349 HLA-DOAP06340 250 aa16.52■□□□□ 0.24
VPS33A-209ENST00000544349 MYH8P13535 1937 aa16.52■□□□□ 0.24
VPS33A-209ENST00000544349 CACNB3P54284 484 aa16.52■□□□□ 0.24
VPS33A-209ENST00000544349 ZFPM1Q8IX07 1006 aa16.52■□□□□ 0.24
VPS33A-209ENST00000544349 NIM1KQ8IY84 436 aa16.52■□□□□ 0.24
VPS33A-209ENST00000544349 GMLQ99445 158 aa16.52■□□□□ 0.24
VPS33A-209ENST00000544349 GOLPH3LQ9H4A5 285 aa16.52■□□□□ 0.24
VPS33A-209ENST00000544349 FAM198AQ9UFP1 575 aa16.52■□□□□ 0.24
VPS33A-209ENST00000544349 STX8Q9UNK0 236 aa16.52■□□□□ 0.24
VPS33A-209ENST00000544349 TPM2P07951 284 aa16.52■□□□□ 0.23
VPS33A-209ENST00000544349 PTGER2P43116 358 aa16.52■□□□□ 0.23
VPS33A-209ENST00000544349 AKAP17AQ02040 695 aaKnown RBP16.52■□□□□ 0.23
VPS33A-209ENST00000544349 SRBD1Q8N5C6 995 aaKnown RBP16.52■□□□□ 0.23
VPS33A-209ENST00000544349 TMEM47Q9BQJ4 181 aa16.52■□□□□ 0.23
VPS33A-209ENST00000544349 RCOR1Q9UKL0 485 aa16.52■□□□□ 0.23
VPS33A-209ENST00000544349 TAOK2Q9UL54 1235 aa16.52■□□□□ 0.23
VPS33A-209ENST00000544349 KIF5BP33176 963 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms