RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 KRT19P08727 400 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 SF3A3Q12874 501 aaKnown RBP eCLIP11.48□□□□□ -0.57
PCDH9-204ENST00000544246 GRK7Q8WTQ7 553 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 NLRP7Q8WX94 980 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 SNX21Q969T3 373 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 SERPINB6P35237 376 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 PDE1AP54750 535 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 PPARDQ03181 441 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 KRT81Q14533 505 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 KRT71Q3SY84 523 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 CHST3Q7LGC8 479 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 BANK1Q8NDB2 785 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 SLAIN2Q9P270 581 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 MYO1AQ9UBC5 1043 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.48□□□□□ -0.57
PCDH9-204ENST00000544246 M0QZ92 97 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 FLOT1O75955 427 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 MMEL1Q495T6 779 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 AP1ARQ63HQ0 302 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 PEX26Q7Z412 305 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 MIGA1Q8NAN2 632 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 YEATS2Q9ULM3 1422 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 SND1Q7KZF4 910 aaKnown RBP eCLIP11.48□□□□□ -0.57
PCDH9-204ENST00000544246 ERCC6L2Q5T890 1561 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 LDHBP07195 334 aaKnown RBP11.48□□□□□ -0.57
PCDH9-204ENST00000544246 SLC8A1P32418 973 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 AK2P54819 239 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 SFMBT2Q5VUG0 894 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 POMGNT1Q8WZA1 660 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 RAB20Q9NX57 234 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 NUB1Q9Y5A7 615 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 ORC6Q9Y5N6 252 aa11.48□□□□□ -0.57
PCDH9-204ENST00000544246 ATP6V1AP38606 617 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 NCAPH2Q6IBW4 605 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 TMTC1Q8IUR5 882 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 CFAP61Q8NHU2 1237 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 CHMP6Q96FZ7 201 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 FAM8A1Q9UBU6 413 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 C11orf95C9JLR9 678 aaPredicted RBP11.47□□□□□ -0.57
PCDH9-204ENST00000544246 GOLGA8KD6RF30 607 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 SPOUT1Q5T280 376 aaKnown RBP11.47□□□□□ -0.57
PCDH9-204ENST00000544246 CREB3L3Q68CJ9 461 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 EYA3Q99504 573 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 CAPN7Q9Y6W3 813 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 RAD50Q92878 1312 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 A0A1B0GVL5 298 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 CD19P15391 556 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 GARSP41250 739 aaKnown RBP11.47□□□□□ -0.57
PCDH9-204ENST00000544246 CASP2P42575 452 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 JDP2Q8WYK2 163 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 HDAC11Q96DB2 347 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 ANKRD2Q9GZV1 360 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 RIC8AQ9NPQ8 531 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 ZCCHC11Q5TAX3 1644 aaKnown RBP11.47□□□□□ -0.57
PCDH9-204ENST00000544246 SESN3P58005 492 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 HDAC1Q13547 482 aaPredicted RBP11.47□□□□□ -0.57
PCDH9-204ENST00000544246 TRIM50Q86XT4 487 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 SPATS2Q86XZ4 545 aaKnown RBP11.47□□□□□ -0.57
PCDH9-204ENST00000544246 GPCPD1Q9NPB8 672 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 PICK1Q9NRD5 415 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 TTC41PQ6P2S7 1318 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 GOLGA8QA0A0J9YX86 632 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 GOLGA8OA6NCC3 632 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 HNRNPCL2B2RXH8 293 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 GOLGA8NF8WBI6 632 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 HNRNPCL1O60812 293 aaKnown RBP11.47□□□□□ -0.57
PCDH9-204ENST00000544246 DNM2P50570 870 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 ELF2Q15723 593 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 DHX32Q7L7V1 743 aaKnown RBP11.47□□□□□ -0.57
PCDH9-204ENST00000544246 TTC6Q86TZ1 520 aa11.47□□□□□ -0.57
PCDH9-204ENST00000544246 RXRAP19793 462 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 CTNNA1P35221 906 aaKnown RBP11.46□□□□□ -0.57
PCDH9-204ENST00000544246 MAGEA1P43355 309 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 KLHL30Q0D2K2 578 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 CCDC184Q52MB2 194 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 ZNF772Q68DY9 489 aaPredicted RBP11.46□□□□□ -0.57
PCDH9-204ENST00000544246 FCHSD1Q86WN1 690 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 DRC3Q9H069 523 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 ALDH1L1O75891 902 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 ITKQ08881 620 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 TMTC4Q5T4D3 741 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 MED10Q9BTT4 135 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 SYF2O95926 243 aaKnown RBP11.46□□□□□ -0.57
PCDH9-204ENST00000544246 FANCCQ00597 558 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 LONRF3Q496Y0 759 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 RASEFQ8IZ41 740 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 GLT8D2Q9H1C3 349 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 AZI2Q9H6S1 392 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 SPC25Q9HBM1 224 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 CHPF2Q9P2E5 772 aa11.46□□□□□ -0.57
PCDH9-204ENST00000544246 MAGI2Q86UL8 1455 aa11.46□□□□□ -0.58
PCDH9-204ENST00000544246 WASLO00401 505 aaPredicted RBP11.46□□□□□ -0.58
PCDH9-204ENST00000544246 RAB3GAP1Q15042 981 aa11.46□□□□□ -0.58
PCDH9-204ENST00000544246 RASIP1Q5U651 963 aa11.46□□□□□ -0.58
PCDH9-204ENST00000544246 ZC3H12CQ9C0D7 883 aaKnown RBP11.46□□□□□ -0.58
PCDH9-204ENST00000544246 ARHGEF10LQ9HCE6 1279 aa11.46□□□□□ -0.58
PCDH9-204ENST00000544246 ZC4H2Q9NQZ6 224 aa11.46□□□□□ -0.58
PCDH9-204ENST00000544246 IMPACTQ9P2X3 320 aa11.46□□□□□ -0.58
PCDH9-204ENST00000544246 IPO11Q9UI26 975 aaKnown RBP11.46□□□□□ -0.58
PCDH9-204ENST00000544246 NIP7Q9Y221 180 aaKnown RBP eCLIP11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms