RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	SH2D4A	Q9H788	454 aa		13.96	□□□□□ -0.17
DDB1-223	ENST00000543658	KAT14	Q9H8E8	782 aa		13.96	□□□□□ -0.17
DDB1-223	ENST00000543658	KANSL2	Q9H9L4	492 aa		13.96	□□□□□ -0.17
DDB1-223	ENST00000543658	TCP11L1	Q9NUJ3	509 aa		13.96	□□□□□ -0.17
DDB1-223	ENST00000543658	FZD1	Q9UP38	647 aa		13.96	□□□□□ -0.17
DDB1-223	ENST00000543658	PHF20L1	A8MW92	1017 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	SH2B2	O14492	632 aa	Predicted RBP	13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	TTLL1	O95922	423 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	MCM2	P49736	904 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	ANTXR2	P58335	489 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	EXOSC10	Q01780	885 aa	Known RBP	13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	FSTL1	Q12841	308 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	SEPT2	Q15019	361 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	NOL9	Q5SY16	702 aa	Known RBP	13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	NOL8	Q76FK4	1167 aa	Known RBP	13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	HSCB	Q8IWL3	235 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	BRF1	Q92994	677 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	CEP95	Q96GE4	821 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	FEZ1	Q99689	392 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	ZNF112	Q9UJU3	913 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	PTPRF	P10586	1907 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	MYH6	P13533	1939 aa		13.95	□□□□□ -0.18
DDB1-223	ENST00000543658	USP17L5	A8MUK1	530 aa		13.94	□□□□□ -0.18
DDB1-223	ENST00000543658	RAD21	O60216	631 aa		13.94	□□□□□ -0.18
DDB1-223	ENST00000543658	NMT2	O60551	498 aa		13.94	□□□□□ -0.18
DDB1-223	ENST00000543658	ITGBL1	O95965	494 aa	Predicted RBP	13.94	□□□□□ -0.18
DDB1-223	ENST00000543658	AK2	P54819	239 aa		13.94	□□□□□ -0.18
DDB1-223	ENST00000543658	MAP3K11	Q16584	847 aa		13.94	□□□□□ -0.18
DDB1-223	ENST00000543658	DGKH	Q86XP1	1220 aa		13.94	□□□□□ -0.18
DDB1-223	ENST00000543658	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.94	□□□□□ -0.18
DDB1-223	ENST00000543658	TTC14	Q96N46	770 aa		13.94	□□□□□ -0.18
DDB1-223	ENST00000543658	TBC1D2	Q9BYX2	928 aa		13.94	□□□□□ -0.18
DDB1-223	ENST00000543658	UNCX	A6NJT0	531 aa		13.93	□□□□□ -0.18
DDB1-223	ENST00000543658	LIFR	P42702	1097 aa		13.93	□□□□□ -0.18
DDB1-223	ENST00000543658	FMR1	Q06787	632 aa	Known RBP eCLIP	13.93	□□□□□ -0.18	2e-7	■■■■□ 21
DDB1-223	ENST00000543658	VGLL4	Q14135	290 aa		13.93	□□□□□ -0.18
DDB1-223	ENST00000543658	CATIP	Q7Z7H3	387 aa		13.93	□□□□□ -0.18
DDB1-223	ENST00000543658	ENAH	Q8N8S7	591 aa	Predicted RBP	13.93	□□□□□ -0.18
DDB1-223	ENST00000543658	LY9	Q9HBG7	655 aa		13.93	□□□□□ -0.18
DDB1-223	ENST00000543658	TSHZ2	Q9NRE2	1034 aa		13.93	□□□□□ -0.18
DDB1-223	ENST00000543658	MTMR4	Q9NYA4	1195 aa		13.93	□□□□□ -0.18
DDB1-223	ENST00000543658	NYAP2	Q9P242	653 aa		13.93	□□□□□ -0.18
DDB1-223	ENST00000543658	CLIP2	Q9UDT6	1046 aa		13.93	□□□□□ -0.18
DDB1-223	ENST00000543658	SLC12A7	Q9Y666	1083 aa		13.93	□□□□□ -0.18
DDB1-223	ENST00000543658	IGKV6D-41	A0A0C4DH26	115 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	KLF18	A0A0U1RQI7	1052 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	UBE2Q2L	H0YL09	131 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	TOP1	P11387	765 aa	Known RBP	13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	EEF2	P13639	858 aa	Known RBP	13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	APOBR	Q0VD83	1088 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	BECN1	Q14457	450 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	RRP1B	Q14684	758 aa	Known RBP	13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	SEC23A	Q15436	765 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	MOB2	Q70IA6	237 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	CLEC10A	Q8IUN9	316 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	IGDCC4	Q8TDY8	1250 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	ELP3	Q9H9T3	547 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	GOPC	Q9HD26	462 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	IL17RB	Q9NRM6	502 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	ISY1	Q9ULR0	285 aa	Known RBP	13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	MTMR7	Q9Y216	660 aa		13.92	□□□□□ -0.18
DDB1-223	ENST00000543658	PASK	Q96RG2	1323 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	GOLGA8B	A8MQT2	603 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	CALM1	P0DP23	149 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	CALM2	P0DP24	149 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	CALM3	P0DP25	149 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	PTPRA	P18433	802 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	GUCY1A2	P33402	732 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	TOB2	Q14106	344 aa	Predicted RBP	13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	SGMS1	Q86VZ5	419 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	LRRC47	Q8N1G4	583 aa	Known RBP	13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	FBXL16	Q8N461	479 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	PNMA1	Q8ND90	353 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	NKX2-3	Q8TAU0	364 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	NUP133	Q8WUM0	1156 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	SLC10A4	Q96EP9	437 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	TMEM47	Q9BQJ4	181 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	ABT1	Q9ULW3	272 aa	Known RBP	13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	LIMCH1	Q9UPQ0	1083 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	SNCAIP	Q9Y6H5	919 aa		13.91	□□□□□ -0.18
DDB1-223	ENST00000543658	ZBTB43	O43298	467 aa		13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	DDAH1	O94760	285 aa		13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	USP14	P54578	494 aa		13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	HUNK	P57058	714 aa		13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	COL9A3	Q14050	684 aa	Predicted RBP	13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	MICU3	Q86XE3	530 aa		13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	ERO1B	Q86YB8	467 aa		13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	ZNF654	Q8IZM8	581 aa		13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	CTCFL	Q8NI51	663 aa	Predicted RBP	13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	CHMP4C	Q96CF2	233 aa		13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	OTUD5	Q96G74	571 aa		13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	AGXT2	Q9BYV1	514 aa		13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	SLK	Q9H2G2	1235 aa	Predicted RBP	13.9	□□□□□ -0.18
DDB1-223	ENST00000543658	GPHN	Q9NQX3	736 aa	Predicted RBP	13.9	□□□□□ -0.18

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