RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MKNK2Q9HBH9 465 aa18.77■□□□□ 0.6
COL4A1-204ENST00000543140 IL17RBQ9NRM6 502 aa18.77■□□□□ 0.6
COL4A1-204ENST00000543140 PLCD1P51178 756 aa18.77■□□□□ 0.6
COL4A1-204ENST00000543140 NOLC1Q14978 699 aaKnown RBP eCLIP18.77■□□□□ 0.6
COL4A1-204ENST00000543140 TBC1D16Q8TBP0 767 aa18.77■□□□□ 0.6
COL4A1-204ENST00000543140 CNTNAP5Q8WYK1 1306 aa18.77■□□□□ 0.59
COL4A1-204ENST00000543140 USP17L3A6NCW0 530 aa18.76■□□□□ 0.59
COL4A1-204ENST00000543140 USP17L4A6NCW7 530 aa18.76■□□□□ 0.59
COL4A1-204ENST00000543140 KRT2P35908 639 aa18.76■□□□□ 0.59
COL4A1-204ENST00000543140 BTDP43251 543 aa18.76■□□□□ 0.59
COL4A1-204ENST00000543140 MFSD14BQ5SR56 506 aa18.76■□□□□ 0.59
COL4A1-204ENST00000543140 USP17L1Q7RTZ2 530 aa18.76■□□□□ 0.59
COL4A1-204ENST00000543140 TIGD1Q96MW7 591 aa18.76■□□□□ 0.59
COL4A1-204ENST00000543140 RTFDC1Q9BY42 306 aaPredicted RBP18.76■□□□□ 0.59
COL4A1-204ENST00000543140 FBXO2Q9UK22 296 aaPredicted RBP18.76■□□□□ 0.59
COL4A1-204ENST00000543140 MTMR7Q9Y216 660 aa18.76■□□□□ 0.59
COL4A1-204ENST00000543140 LDHCP07864 332 aa18.76■□□□□ 0.59
COL4A1-204ENST00000543140 VEGFAP15692 232 aaPredicted RBP18.76■□□□□ 0.59
COL4A1-204ENST00000543140 NOM1Q5C9Z4 860 aaKnown RBP18.76■□□□□ 0.59
COL4A1-204ENST00000543140 ZBTB22O15209 634 aa18.75■□□□□ 0.59
COL4A1-204ENST00000543140 TPM3P06753 285 aa18.75■□□□□ 0.59
COL4A1-204ENST00000543140 IL1R1P14778 569 aa18.75■□□□□ 0.59
COL4A1-204ENST00000543140 NLRP12P59046 1061 aa18.75■□□□□ 0.59
COL4A1-204ENST00000543140 LRMPQ12912 555 aa18.75■□□□□ 0.59
COL4A1-204ENST00000543140 KAT14Q9H8E8 782 aa18.75■□□□□ 0.59
COL4A1-204ENST00000543140 FAM237AA0A1B0GTK4 181 aa18.75■□□□□ 0.59
COL4A1-204ENST00000543140 RIMBP2O15034 1052 aa18.75■□□□□ 0.59
COL4A1-204ENST00000543140 HOXA10P31260 410 aaPredicted RBP18.75■□□□□ 0.59
COL4A1-204ENST00000543140 PPP4CP60510 307 aa18.75■□□□□ 0.59
COL4A1-204ENST00000543140 DNTTIP2Q5QJE6 756 aaKnown RBP18.75■□□□□ 0.59
COL4A1-204ENST00000543140 AMOTL1Q8IY63 956 aa18.75■□□□□ 0.59
COL4A1-204ENST00000543140 CNNM3Q8NE01 707 aa18.75■□□□□ 0.59
COL4A1-204ENST00000543140 FOXN1O15353 648 aa18.74■□□□□ 0.59
COL4A1-204ENST00000543140 PTPREP23469 700 aa18.74■□□□□ 0.59
COL4A1-204ENST00000543140 RBM6P78332 1123 aaKnown RBP18.74■□□□□ 0.59
COL4A1-204ENST00000543140 CCDC144BQ3MJ40 725 aa18.74■□□□□ 0.59
COL4A1-204ENST00000543140 SARM1Q6SZW1 724 aa18.74■□□□□ 0.59
COL4A1-204ENST00000543140 OLFM4Q6UX06 510 aa18.74■□□□□ 0.59
COL4A1-204ENST00000543140 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.74■□□□□ 0.59
COL4A1-204ENST00000543140 METTL16Q86W50 562 aaKnown RBP18.74■□□□□ 0.59
COL4A1-204ENST00000543140 KRBA2Q6ZNG9 492 aa18.74■□□□□ 0.59
COL4A1-204ENST00000543140 NAV1Q8NEY1 1877 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 CDK5RAP2Q96SN8 1893 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 WNT7AO00755 349 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 TSPY3P0CV98 308 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 TSPY8P0CW00 308 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 ZNF827Q17R98 1081 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 USP49Q70CQ1 688 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 PDILTQ8N807 584 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 PNMA1Q8ND90 353 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 KIAA1524Q8TCG1 905 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 CRAMP1Q96RY5 1269 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 TRIM75PA6NK02 468 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 POLR2DO15514 142 aaKnown RBP18.73■□□□□ 0.59
COL4A1-204ENST00000543140 NPY5RQ15761 445 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 FOXP4Q8IVH2 680 aaPredicted RBP18.73■□□□□ 0.59
COL4A1-204ENST00000543140 TEX11Q8IYF3 940 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 ZNF444Q8N0Y2 327 aaPredicted RBP18.73■□□□□ 0.59
COL4A1-204ENST00000543140 STAG2Q8N3U4 1231 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 PODXL2Q9NZ53 605 aa18.73■□□□□ 0.59
COL4A1-204ENST00000543140 PPEF1O14829 653 aaPredicted RBP18.72■□□□□ 0.59
COL4A1-204ENST00000543140 SCG2P13521 617 aa18.72■□□□□ 0.59
COL4A1-204ENST00000543140 CSRNP2Q9H175 543 aa18.72■□□□□ 0.59
COL4A1-204ENST00000543140 FAM13BQ9NYF5 915 aa18.72■□□□□ 0.59
COL4A1-204ENST00000543140 TUBE1Q9UJT0 475 aa18.72■□□□□ 0.59
COL4A1-204ENST00000543140 CEP131Q9UPN4 1083 aa18.72■□□□□ 0.59
COL4A1-204ENST00000543140 ADAMTS3O15072 1205 aa18.72■□□□□ 0.59
COL4A1-204ENST00000543140 GTF2IP78347 998 aa18.72■□□□□ 0.59
COL4A1-204ENST00000543140 STX8Q9UNK0 236 aa18.72■□□□□ 0.59
COL4A1-204ENST00000543140 SRPRBQ9Y5M8 271 aaKnown RBP18.72■□□□□ 0.59
COL4A1-204ENST00000543140 GPR75-ASB3A0A0A6YYF3 556 aa18.71■□□□□ 0.59
COL4A1-204ENST00000543140 KIF5BP33176 963 aa18.71■□□□□ 0.59
COL4A1-204ENST00000543140 ZNF174Q15697 407 aa18.71■□□□□ 0.59
COL4A1-204ENST00000543140 DGKHQ86XP1 1220 aa18.71■□□□□ 0.59
COL4A1-204ENST00000543140 MRFAP1L1Q96HT8 127 aa18.71■□□□□ 0.59
COL4A1-204ENST00000543140 BRMS1Q9HCU9 246 aa18.71■□□□□ 0.59
COL4A1-204ENST00000543140 PCDHA5Q9Y5H7 936 aa18.71■□□□□ 0.59
COL4A1-204ENST00000543140 NLRP5P59047 1200 aa18.71■□□□□ 0.59
COL4A1-204ENST00000543140 COL23A1Q86Y22 540 aaPredicted RBP18.71■□□□□ 0.59
COL4A1-204ENST00000543140 KLRG2A4D1S0 409 aaPredicted RBP18.7■□□□□ 0.58
COL4A1-204ENST00000543140 F8W031 263 aaPredicted RBP18.7■□□□□ 0.58
COL4A1-204ENST00000543140 RASA1P20936 1047 aa18.7■□□□□ 0.58
COL4A1-204ENST00000543140 CDC25BP30305 580 aa18.7■□□□□ 0.58
COL4A1-204ENST00000543140 ARID5BQ14865 1188 aa18.7■□□□□ 0.58
COL4A1-204ENST00000543140 PFKFB3Q16875 520 aaPredicted RBP18.7■□□□□ 0.58
COL4A1-204ENST00000543140 GPKOWQ92917 476 aaPredicted RBP eCLIP18.7■□□□□ 0.58
COL4A1-204ENST00000543140 BPIFA3Q9BQP9 254 aa18.7■□□□□ 0.58
COL4A1-204ENST00000543140 SERTAD1Q9UHV2 236 aa18.7■□□□□ 0.58
COL4A1-204ENST00000543140 ROBO3Q96MS0 1386 aa18.7■□□□□ 0.58
COL4A1-204ENST00000543140 FILIP1Q7Z7B0 1213 aa18.7■□□□□ 0.58
COL4A1-204ENST00000543140 GRAMD1CQ8IYS0 662 aa18.7■□□□□ 0.58
COL4A1-204ENST00000543140 CACTINQ8WUQ7 758 aaKnown RBP18.7■□□□□ 0.58
COL4A1-204ENST00000543140 TNFRSF25Q93038 417 aa18.7■□□□□ 0.58
COL4A1-204ENST00000543140 ANKRD31Q8N7Z5 1873 aa18.7■□□□□ 0.58
COL4A1-204ENST00000543140 SP8Q8IXZ3 490 aa18.69■□□□□ 0.58
COL4A1-204ENST00000543140 SPTLC3Q9NUV7 552 aa18.69■□□□□ 0.58
COL4A1-204ENST00000543140 FLT1P17948 1338 aa18.69■□□□□ 0.58
COL4A1-204ENST00000543140 IGSF3O75054 1194 aa18.69■□□□□ 0.58
COL4A1-204ENST00000543140 LMOD1P29536 600 aaPredicted RBP18.69■□□□□ 0.58
COL4A1-204ENST00000543140 CDK8P49336 464 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 141.4 ms