RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, human

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD4-209	ENST00000542717	NUP133	Q8WUM0	1156 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	FAM151A	Q8WW52	585 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	USP6NL	Q92738	828 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	MYD88	Q99836	296 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	SPINK5	Q9NQ38	1064 aa	Predicted RBP	4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	XPNPEP3	Q9NQH7	507 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	LMCD1	Q9NZU5	365 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	TSPYL4	Q9UJ04	414 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	TBX21	Q9UL17	535 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	MTUS1	Q9ULD2	1270 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	PHF24	Q9UPV7	400 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	CHD6	Q8TD26	2715 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	CHD7	Q9P2D1	2997 aa		4.23	□□□□□ -1.73
CHD4-209	ENST00000542717	MROH7	Q68CQ1	1323 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	ANKRD11	Q6UB99	2663 aa	Predicted RBP	4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	PLIN1	O60240	522 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	PGK1	P00558	417 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	PCCA	P05165	728 aa	Predicted RBP	4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	RARB	P10826	455 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	NUBP1	P53384	320 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	CCL23	P55773	120 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	HERVK_113	P62684	666 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	ERVK-9	P63128	1117 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	ERVK-24	P63145	666 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	ZXDA	P98168	799 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	TAP1	Q03518	808 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	CNGB1	Q14028	1251 aa	Predicted RBP	4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	RSPO4	Q2I0M5	234 aa	Predicted RBP	4.22	□□□□□ -1.73
CHD4-209	ENST00000542717		Q3C1V9	767 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	PRAMEF19	Q5SWL8	479 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	ANKRD33	Q7Z3H0	272 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	RPUSD2	Q8IZ73	545 aa	Known RBP	4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	TTLL11	Q8NHH1	800 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	RSPH6A	Q9H0K4	717 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	TXNRD2	Q9NNW7	524 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	CWC25	Q9NXE8	425 aa	Predicted RBP	4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	DLL3	Q9NYJ7	618 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	TMOD4	Q9NZQ9	345 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	SPEF2	Q9C093	1822 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	CHD9	Q3L8U1	2897 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	GVINP1	Q7Z2Y8	2422 aa		4.22	□□□□□ -1.73
CHD4-209	ENST00000542717	SPTBN2	O15020	2390 aa		4.21	□□□□□ -1.73
CHD4-209	ENST00000542717	SLC15A5	A6NIM6	579 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	LPXN	O60711	386 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	CTNND1	O60716	968 aa	Known RBP	4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	PTPRE	P23469	700 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	HDLBP	Q00341	1268 aa	Known RBP	4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	GOLGA2	Q08379	1002 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	SIGLEC14	Q08ET2	396 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	TRIM28	Q13263	835 aa	Known RBP	4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	MKRN4P	Q13434	485 aa	Predicted RBP	4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	CLUL1	Q15846	466 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	ZBTB33	Q86T24	672 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	VPS37D	Q86XT2	251 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	ZNF280C	Q8ND82	737 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	NPLOC4	Q8TAT6	608 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	NEK9	Q8TD19	979 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	GLT1D1	Q96MS3	346 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	ZDHHC15	Q96MV8	337 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	CRBN	Q96SW2	442 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	ALG13	Q9NP73	1137 aa	Known RBP	4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	CLDND1	Q9NY35	253 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	CHPF2	Q9P2E5	772 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	RBPJL	Q9UBG7	517 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	NUDC	Q9Y266	331 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	KMT2E	Q8IZD2	1858 aa		4.21	□□□□□ -1.74
CHD4-209	ENST00000542717	RFX7	Q2KHR2	1363 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	PHF20L1	A8MW92	1017 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	STXBP3	O00186	592 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	ARHGEF15	O94989	841 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	LMNA	P02545	664 aa	Known RBP	4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	ACTN1	P12814	892 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	SDHB	P21912	280 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	ITGA6	P23229	1130 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	HIBADH	P31937	336 aa	Known RBP	4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	ZEB1	P37275	1124 aa	Predicted RBP	4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	GYG1	P46976	350 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	ACLY	P53396	1101 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	NFIA	Q12857	509 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	NFE2L2	Q16236	605 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	GRIK5	Q16478	980 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	APOBEC3H	Q6NTF7	200 aa	Known RBP	4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	C15orf52	Q6ZUT6	534 aa	Known RBP	4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	CCDC191	Q8NCU4	936 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	GTF3C2	Q8WUA4	911 aa	Predicted RBP	4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	CFAP53	Q96M91	514 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	SLC9A7	Q96T83	725 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	ZBED2	Q9BTP6	218 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	HIPK3	Q9H422	1215 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	AS3MT	Q9HBK9	375 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	SLC5A4	Q9NY91	659 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	SETX	Q7Z333	2677 aa	Known RBP	4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	EP300	Q09472	2414 aa	Predicted RBP	4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	MAST3	O60307	1309 aa		4.2	□□□□□ -1.74
CHD4-209	ENST00000542717	TRANK1	O15050	2925 aa		4.19	□□□□□ -1.74
CHD4-209	ENST00000542717	PTPRF	P10586	1907 aa		4.19	□□□□□ -1.74
CHD4-209	ENST00000542717	FLNB	O75369	2602 aa	Known RBP	4.19	□□□□□ -1.74
CHD4-209	ENST00000542717		A0A0U1RQG5	324 aa	Predicted RBP	4.19	□□□□□ -1.74

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