RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 MAP3K14Q99558 947 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 DNAJC25Q9H1X3 360 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 KAT14Q9H8E8 782 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 AP5Z1O43299 807 aa16.77■□□□□ 0.28
CLIP1-216ENST00000541410 DDAH1O94760 285 aa16.77■□□□□ 0.28
CLIP1-216ENST00000541410 RASA1P20936 1047 aa16.77■□□□□ 0.28
CLIP1-216ENST00000541410 RCAN1P53805 252 aa16.77■□□□□ 0.28
CLIP1-216ENST00000541410 PTPAQ15257 358 aa16.77■□□□□ 0.28
CLIP1-216ENST00000541410 NOM1Q5C9Z4 860 aaKnown RBP16.77■□□□□ 0.28
CLIP1-216ENST00000541410 TMED8Q6PL24 325 aaPredicted RBP16.77■□□□□ 0.28
CLIP1-216ENST00000541410 SASS6Q6UVJ0 657 aa16.77■□□□□ 0.28
CLIP1-216ENST00000541410 TMTC3Q6ZXV5 915 aa16.77■□□□□ 0.28
CLIP1-216ENST00000541410 CABP5Q9NP86 173 aa16.77■□□□□ 0.28
CLIP1-216ENST00000541410 UTRNP46939 3433 aa16.77■□□□□ 0.28
CLIP1-216ENST00000541410 CDK8P49336 464 aa16.77■□□□□ 0.27
CLIP1-216ENST00000541410 EARS2Q5JPH6 523 aaKnown RBP16.77■□□□□ 0.27
CLIP1-216ENST00000541410 RBM43Q6ZSC3 357 aaKnown RBP16.77■□□□□ 0.27
CLIP1-216ENST00000541410 FMR1NBQ8N0W7 255 aaPredicted RBP16.77■□□□□ 0.27
CLIP1-216ENST00000541410 FAM43AQ8N2R8 423 aa16.77■□□□□ 0.27
CLIP1-216ENST00000541410 PNMA1Q8ND90 353 aa16.77■□□□□ 0.27
CLIP1-216ENST00000541410 GAKO14976 1311 aa16.76■□□□□ 0.27
CLIP1-216ENST00000541410 CNTNAP5Q8WYK1 1306 aa16.76■□□□□ 0.27
CLIP1-216ENST00000541410 CPVLQ9H3G5 476 aa16.76■□□□□ 0.27
CLIP1-216ENST00000541410 DDX4Q9NQI0 724 aaKnown RBP16.76■□□□□ 0.27
CLIP1-216ENST00000541410 RBM28Q9NW13 759 aaKnown RBP16.76■□□□□ 0.27
CLIP1-216ENST00000541410 PCDHB6Q9Y5E3 794 aa16.76■□□□□ 0.27
CLIP1-216ENST00000541410 DDX60LQ5H9U9 1706 aaKnown RBP16.76■□□□□ 0.27
CLIP1-216ENST00000541410 ESPNB1AK53 854 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 ADAMTS3O15072 1205 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 PRPF3O43395 683 aaKnown RBP16.75■□□□□ 0.27
CLIP1-216ENST00000541410 ADCY5O95622 1261 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 GOLGA8HP0CJ92 632 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 CALM1P0DP23 149 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 CALM2P0DP24 149 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 CALM3P0DP25 149 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 KIAA0825Q8IV33 1275 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 SDF4Q9BRK5 362 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 STK32BQ9NY57 414 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 SCN9AQ15858 1988 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 PFKFB1P16118 471 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 CACNB3P54284 484 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 GRIN1Q05586 938 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 SLF2Q8IX21 1173 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 FAM163AQ96GL9 167 aaPredicted RBP16.75■□□□□ 0.27
CLIP1-216ENST00000541410 EYA3Q99504 573 aa16.75■□□□□ 0.27
CLIP1-216ENST00000541410 PLCG2P16885 1265 aa16.74■□□□□ 0.27
CLIP1-216ENST00000541410 SHC4Q6S5L8 630 aa16.74■□□□□ 0.27
CLIP1-216ENST00000541410 CBX8Q9HC52 389 aa16.74■□□□□ 0.27
CLIP1-216ENST00000541410 ROBO3Q96MS0 1386 aa16.74■□□□□ 0.27
CLIP1-216ENST00000541410 A0A1W2PQ27 194 aa16.74■□□□□ 0.27
CLIP1-216ENST00000541410 A0A1W2PQ64 194 aa16.74■□□□□ 0.27
CLIP1-216ENST00000541410 A0A1W2PQD8 194 aa16.74■□□□□ 0.27
CLIP1-216ENST00000541410 PPP2R5BQ15173 497 aa16.74■□□□□ 0.27
CLIP1-216ENST00000541410 C11orf57Q6ZUT1 292 aaPredicted RBP16.74■□□□□ 0.27
CLIP1-216ENST00000541410 CLEC10AQ8IUN9 316 aa16.74■□□□□ 0.27
CLIP1-216ENST00000541410 FAM200AQ8TCP9 573 aa16.74■□□□□ 0.27
CLIP1-216ENST00000541410 GPKOWQ92917 476 aaPredicted RBP eCLIP16.74■□□□□ 0.27
CLIP1-216ENST00000541410 USP40Q9NVE5 1235 aa16.74■□□□□ 0.27
CLIP1-216ENST00000541410 WNT7AO00755 349 aa16.73■□□□□ 0.27
CLIP1-216ENST00000541410 ZNF202O95125 648 aa16.73■□□□□ 0.27
CLIP1-216ENST00000541410 AOC3Q16853 763 aa16.73■□□□□ 0.27
CLIP1-216ENST00000541410 UVSSAQ2YD98 709 aa16.73■□□□□ 0.27
CLIP1-216ENST00000541410 C16orf86Q6ZW13 317 aa16.73■□□□□ 0.27
CLIP1-216ENST00000541410 TMEM47Q9BQJ4 181 aa16.73■□□□□ 0.27
CLIP1-216ENST00000541410 FOXP1Q9H334 677 aaPredicted RBP16.73■□□□□ 0.27
CLIP1-216ENST00000541410 SNED1Q8TER0 1413 aa16.73■□□□□ 0.27
CLIP1-216ENST00000541410 EIF6P56537 245 aaKnown RBP16.73■□□□□ 0.27
CLIP1-216ENST00000541410 DGKHQ86XP1 1220 aa16.73■□□□□ 0.27
CLIP1-216ENST00000541410 PHF20Q9BVI0 1012 aa16.73■□□□□ 0.27
CLIP1-216ENST00000541410 BIN1O00499 593 aa16.72■□□□□ 0.27
CLIP1-216ENST00000541410 PTMAP06454 111 aaKnown RBP16.72■□□□□ 0.27
CLIP1-216ENST00000541410 ZNF165P49910 485 aa16.72■□□□□ 0.27
CLIP1-216ENST00000541410 ISM2Q6H9L7 571 aa16.72■□□□□ 0.27
CLIP1-216ENST00000541410 C21orf2O43822 256 aa16.72■□□□□ 0.27
CLIP1-216ENST00000541410 ECE2O60344 883 aa16.72■□□□□ 0.27
CLIP1-216ENST00000541410 XBP1P17861 261 aa16.72■□□□□ 0.27
CLIP1-216ENST00000541410 CMA1P23946 247 aa16.72■□□□□ 0.27
CLIP1-216ENST00000541410 RBM5P52756 815 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLIP1-216ENST00000541410 NFIAQ12857 509 aa16.72■□□□□ 0.27
CLIP1-216ENST00000541410 SLC35G1Q2M3R5 365 aa16.72■□□□□ 0.27
CLIP1-216ENST00000541410 CEP95Q96GE4 821 aa16.72■□□□□ 0.27
CLIP1-216ENST00000541410 FOCADQ5VW36 1801 aa16.71■□□□□ 0.27
CLIP1-216ENST00000541410 KRT2P35908 639 aa16.71■□□□□ 0.27
CLIP1-216ENST00000541410 TCP10Q12799 353 aa16.71■□□□□ 0.27
CLIP1-216ENST00000541410 CDC42EP5Q6NZY7 148 aa16.71■□□□□ 0.27
CLIP1-216ENST00000541410 MAD2L2Q9UI95 211 aa16.71■□□□□ 0.27
CLIP1-216ENST00000541410 PPP6R2O75170 966 aa16.71■□□□□ 0.26
CLIP1-216ENST00000541410 SCG2P13521 617 aa16.71■□□□□ 0.26
CLIP1-216ENST00000541410 NPY5RQ15761 445 aa16.71■□□□□ 0.26
CLIP1-216ENST00000541410 STYK1Q6J9G0 422 aa16.71■□□□□ 0.26
CLIP1-216ENST00000541410 ZFPM1Q8IX07 1006 aa16.71■□□□□ 0.26
CLIP1-216ENST00000541410 RGS22Q8NE09 1264 aa16.71■□□□□ 0.26
CLIP1-216ENST00000541410 KIF5BP33176 963 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 SYKP43405 635 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 NLRP5P59047 1200 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 RILPL1Q5EBL4 403 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 APOBEC3HQ6NTF7 200 aaKnown RBP16.7■□□□□ 0.26
CLIP1-216ENST00000541410 USP17L2Q6R6M4 530 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 TEKT1Q969V4 418 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 ZNF830Q96NB3 372 aaPredicted RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms