RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 LDHAL6AQ6ZMR3 332 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 RASEFQ8IZ41 740 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 TXLNBQ8N3L3 684 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 VGLL2Q8N8G2 317 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 WNK4Q96J92 1243 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 FAM53CQ9NYF3 392 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 TRIM17Q9Y577 477 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 MKI67P46013 3256 aaKnown RBP11.97□□□□□ -0.49
CHFR-219ENST00000541341 PHLPP2Q6ZVD8 1323 aa11.97□□□□□ -0.49
CHFR-219ENST00000541341 IGF2BP3O00425 579 aaKnown RBP eCLIP11.97□□□□□ -0.49
CHFR-219ENST00000541341 SLC27A2O14975 620 aa11.97□□□□□ -0.49
CHFR-219ENST00000541341 ECM2O94769 699 aaPredicted RBP11.97□□□□□ -0.49
CHFR-219ENST00000541341 GYG1P46976 350 aa11.97□□□□□ -0.49
CHFR-219ENST00000541341 LRRC24Q50LG9 513 aa11.97□□□□□ -0.49
CHFR-219ENST00000541341 LDLRAD1Q5T700 205 aa11.97□□□□□ -0.49
CHFR-219ENST00000541341 FBXO46Q6PJ61 603 aaPredicted RBP11.97□□□□□ -0.49
CHFR-219ENST00000541341 ZNF804AQ7Z570 1209 aa11.97□□□□□ -0.49
CHFR-219ENST00000541341 LUZP1Q86V48 1076 aa11.97□□□□□ -0.49
CHFR-219ENST00000541341 CDAN1Q8IWY9 1227 aa11.97□□□□□ -0.49
CHFR-219ENST00000541341 GTF3C6Q969F1 213 aa11.97□□□□□ -0.49
CHFR-219ENST00000541341 PUS3Q9BZE2 481 aaKnown RBP11.97□□□□□ -0.49
CHFR-219ENST00000541341 L2HGDHQ9H9P8 463 aa11.97□□□□□ -0.49
CHFR-219ENST00000541341 CNNM1Q9NRU3 951 aa11.97□□□□□ -0.49
CHFR-219ENST00000541341 IQSEC3Q9UPP2 1182 aaPredicted RBP11.97□□□□□ -0.49
CHFR-219ENST00000541341 BRCA2P51587 3418 aa11.96□□□□□ -0.49
CHFR-219ENST00000541341 POTEB2H3BUK9 544 aa11.96□□□□□ -0.49
CHFR-219ENST00000541341 GJA5P36382 358 aa11.96□□□□□ -0.49
CHFR-219ENST00000541341 SNW1Q13573 536 aaKnown RBP11.96□□□□□ -0.49
CHFR-219ENST00000541341 IFNL1Q8IU54 200 aa11.96□□□□□ -0.49
CHFR-219ENST00000541341 CCAR2Q8N163 923 aaKnown RBP11.96□□□□□ -0.49
CHFR-219ENST00000541341 CD99L2Q8TCZ2 262 aa11.96□□□□□ -0.49
CHFR-219ENST00000541341 CNKSR2Q8WXI2 1034 aa11.96□□□□□ -0.49
CHFR-219ENST00000541341 NEK1Q96PY6 1258 aa11.96□□□□□ -0.49
CHFR-219ENST00000541341 TDRD3Q9H7E2 651 aaKnown RBP11.96□□□□□ -0.49
CHFR-219ENST00000541341 ELP3Q9H9T3 547 aa11.96□□□□□ -0.49
CHFR-219ENST00000541341 GPR108Q9NPR9 543 aa11.96□□□□□ -0.49
CHFR-219ENST00000541341 HOOK1Q9UJC3 728 aaKnown RBP11.96□□□□□ -0.49
CHFR-219ENST00000541341 COL1A1P02452 1464 aaPredicted RBP11.95□□□□□ -0.5
CHFR-219ENST00000541341 POTEFA5A3E0 1075 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 SPDYE2BA6NHP3 402 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 PPP1R12BO60237 982 aaPredicted RBP11.95□□□□□ -0.5
CHFR-219ENST00000541341 USP2O75604 605 aaPredicted RBP11.95□□□□□ -0.5
CHFR-219ENST00000541341 MYCP01106 439 aaPredicted RBP11.95□□□□□ -0.5
CHFR-219ENST00000541341 SLFN14P0C7P3 912 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 SPDYE6P0CI01 402 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 SFPQP23246 707 aaKnown RBP eCLIP11.95□□□□□ -0.54e-8■■□□□ 14.2
CHFR-219ENST00000541341 FGD1P98174 961 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 RASA3Q14644 834 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 IQCB1Q15051 598 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 PKN2Q16513 984 aaKnown RBP11.95□□□□□ -0.5
CHFR-219ENST00000541341 CTR9Q6PD62 1173 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 TMCO3Q6UWJ1 677 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 FBXL16Q8N461 479 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 KCNG4Q8TDN1 519 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 CACTINQ8WUQ7 758 aaKnown RBP11.95□□□□□ -0.5
CHFR-219ENST00000541341 FSD1Q9BTV5 496 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 SIL1Q9H173 461 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 TPCN1Q9ULQ1 816 aa11.95□□□□□ -0.5
CHFR-219ENST00000541341 MANSC4A6NHS7 340 aaPredicted RBP11.94□□□□□ -0.5
CHFR-219ENST00000541341 CCDC69A6NI79 296 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 SPDYE4A6NLX3 237 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 TCP10L2B9ZVM9 353 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 IKBKBO14920 756 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 PDE8BO95263 885 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 IL1R1P14778 569 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 LIG1P18858 919 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 FGFR2P21802 821 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 CAP1Q01518 475 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 CRHR2Q13324 411 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 GRIK5Q16478 980 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 PRPF38BQ5VTL8 546 aaKnown RBP11.94□□□□□ -0.5
CHFR-219ENST00000541341 OTOP1Q7RTM1 612 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 BRAPQ7Z569 592 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 CCAR1Q8IX12 1150 aaKnown RBP11.94□□□□□ -0.5
CHFR-219ENST00000541341 UBXN4Q92575 508 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 CCDC34Q96HJ3 373 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 TTF2Q9UNY4 1162 aaKnown RBP11.94□□□□□ -0.5
CHFR-219ENST00000541341 DOCK2Q92608 1830 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 MYH7P12883 1935 aa11.94□□□□□ -0.5
CHFR-219ENST00000541341 EFCAB8A8MWE9 144 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 ZBTB22O15209 634 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 PFKFB2O60825 505 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 YEATS4O95619 227 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 CACNB3P54284 484 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 RESTQ13127 1097 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 UBE4AQ14139 1066 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 CAMK4Q16566 473 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 MFSD14BQ5SR56 506 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 TSHZ3Q63HK5 1081 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 ADALQ6DHV7 355 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 C15orf52Q6ZUT6 534 aaKnown RBP11.93□□□□□ -0.5
CHFR-219ENST00000541341 AACSQ86V21 672 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 CKAP2LQ8IYA6 745 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 ELOA2Q8IYF1 753 aaPredicted RBP11.93□□□□□ -0.5
CHFR-219ENST00000541341 MSL3Q8N5Y2 521 aaKnown RBP11.93□□□□□ -0.5
CHFR-219ENST00000541341 MNS1Q8NEH6 495 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 SMARCC2Q8TAQ2 1214 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 MRPS27Q92552 414 aaKnown RBP11.93□□□□□ -0.5
CHFR-219ENST00000541341 ZNF592Q92610 1267 aa11.93□□□□□ -0.5
CHFR-219ENST00000541341 ZNF274Q96GC6 653 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms