RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-210	ENST00000540975	SNX11	Q9Y5W9	270 aa		10.15	□□□□□ -0.78
YBX3-210	ENST00000540975	PRKCQ	Q04759	706 aa		10.14	□□□□□ -0.79
YBX3-210	ENST00000540975	GK5	Q6ZS86	529 aa		10.14	□□□□□ -0.79
YBX3-210	ENST00000540975	C22orf34	Q6ZV56	151 aa		10.14	□□□□□ -0.79
YBX3-210	ENST00000540975	SPACA3	Q8IXA5	215 aa		10.14	□□□□□ -0.79
YBX3-210	ENST00000540975	STK11IP	Q8N1F8	1099 aa		10.14	□□□□□ -0.79
YBX3-210	ENST00000540975	CBX7	O95931	251 aa		10.13	□□□□□ -0.79
YBX3-210	ENST00000540975	ZNF865	P0CJ78	1059 aa	Predicted RBP	10.13	□□□□□ -0.79
YBX3-210	ENST00000540975	AOC3	Q16853	763 aa		10.13	□□□□□ -0.79
YBX3-210	ENST00000540975	SPRED2	Q7Z698	418 aa		10.13	□□□□□ -0.79
YBX3-210	ENST00000540975	CCDC74B	Q96LY2	380 aa		10.13	□□□□□ -0.79
YBX3-210	ENST00000540975	FBXL18	Q96ME1	805 aa		10.13	□□□□□ -0.79
YBX3-210	ENST00000540975	OAS3	Q9Y6K5	1087 aa	Known RBP	10.13	□□□□□ -0.79
YBX3-210	ENST00000540975	ETV3	P41162	512 aa		10.12	□□□□□ -0.79
YBX3-210	ENST00000540975	BAHD1	Q8TBE0	780 aa	Predicted RBP	10.12	□□□□□ -0.79
YBX3-210	ENST00000540975	COX4I2	Q96KJ9	171 aa		10.12	□□□□□ -0.79
YBX3-210	ENST00000540975	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	10.12	□□□□□ -0.79
YBX3-210	ENST00000540975	RBM25	P49756	843 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-210	ENST00000540975	WFDC3	Q8IUB2	231 aa		10.11	□□□□□ -0.79
YBX3-210	ENST00000540975	FLCN	Q8NFG4	579 aa		10.11	□□□□□ -0.79
YBX3-210	ENST00000540975	HRASLS5	Q96KN8	279 aa		10.11	□□□□□ -0.79
YBX3-210	ENST00000540975	PAK6	Q9NQU5	681 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-210	ENST00000540975	GMIP	Q9P107	970 aa		10.11	□□□□□ -0.79
YBX3-210	ENST00000540975	FAM155A	B1AL88	458 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-210	ENST00000540975	PAK2	Q13177	524 aa		10.1	□□□□□ -0.79
YBX3-210	ENST00000540975	ARSH	Q5FYA8	562 aa		10.1	□□□□□ -0.79
YBX3-210	ENST00000540975	TP53INP2	Q8IXH6	220 aa		10.1	□□□□□ -0.79
YBX3-210	ENST00000540975	PHACTR4	Q8IZ21	702 aa		10.1	□□□□□ -0.79
YBX3-210	ENST00000540975	MFSD4A	Q8N468	514 aa		10.1	□□□□□ -0.79
YBX3-210	ENST00000540975	KIF2C	Q99661	725 aa		10.1	□□□□□ -0.79
YBX3-210	ENST00000540975	CAPN6	Q9Y6Q1	641 aa		10.1	□□□□□ -0.79
YBX3-210	ENST00000540975	CD8B	P10966	210 aa		10.09	□□□□□ -0.79
YBX3-210	ENST00000540975	CD96	P40200	585 aa		10.09	□□□□□ -0.79
YBX3-210	ENST00000540975	KIR3DL1	P43629	444 aa		10.09	□□□□□ -0.79
YBX3-210	ENST00000540975	CDCP2	Q5VXM1	449 aa		10.09	□□□□□ -0.79
YBX3-210	ENST00000540975	ZNF574	Q6ZN55	896 aa	Predicted RBP	10.09	□□□□□ -0.79
YBX3-210	ENST00000540975	ATG4C	Q96DT6	458 aa		10.09	□□□□□ -0.79
YBX3-210	ENST00000540975	ANTXR1	Q9H6X2	564 aa		10.09	□□□□□ -0.79
YBX3-210	ENST00000540975	COL17A1	Q9UMD9	1497 aa	Predicted RBP	10.09	□□□□□ -0.79
YBX3-210	ENST00000540975	RGS13	O14921	159 aa		10.08	□□□□□ -0.8
YBX3-210	ENST00000540975	TNNI2	P48788	182 aa		10.08	□□□□□ -0.8
YBX3-210	ENST00000540975	CLCN7	P51798	805 aa		10.08	□□□□□ -0.8
YBX3-210	ENST00000540975	LRRFIP1	Q32MZ4	808 aa	Known RBP	10.08	□□□□□ -0.8
YBX3-210	ENST00000540975	CDKAL1	Q5VV42	579 aa		10.08	□□□□□ -0.8
YBX3-210	ENST00000540975	CNNM2	Q9H8M5	875 aa		10.08	□□□□□ -0.8
YBX3-210	ENST00000540975	ST14	Q9Y5Y6	855 aa		10.08	□□□□□ -0.8
YBX3-210	ENST00000540975	GBP1	P32455	592 aa		10.07	□□□□□ -0.8
YBX3-210	ENST00000540975	RAD51AP2	Q09MP3	1159 aa		10.07	□□□□□ -0.8
YBX3-210	ENST00000540975	OVOS1	Q6IE37	1185 aa		10.07	□□□□□ -0.8
YBX3-210	ENST00000540975	ASB11	Q8WXH4	323 aa		10.07	□□□□□ -0.8
YBX3-210	ENST00000540975	HSPA12B	Q96MM6	686 aa		10.07	□□□□□ -0.8
YBX3-210	ENST00000540975	TGIF2	Q9GZN2	237 aa		10.07	□□□□□ -0.8
YBX3-210	ENST00000540975	RAG1	P15918	1043 aa		10.06	□□□□□ -0.8
YBX3-210	ENST00000540975	TNK2	Q07912	1038 aa		10.06	□□□□□ -0.8
YBX3-210	ENST00000540975	ABI1	Q8IZP0	508 aa		10.06	□□□□□ -0.8
YBX3-210	ENST00000540975	AGBL5	Q8NDL9	886 aa		10.06	□□□□□ -0.8
YBX3-210	ENST00000540975	TMEM40	Q8WWA1	233 aa		10.06	□□□□□ -0.8
YBX3-210	ENST00000540975		Q96M66	194 aa		10.06	□□□□□ -0.8
YBX3-210	ENST00000540975	SEMA3G	Q9NS98	782 aa		10.06	□□□□□ -0.8
YBX3-210	ENST00000540975	PITPNM2	Q9BZ72	1349 aa		10.06	□□□□□ -0.8
YBX3-210	ENST00000540975	UBOX5	O94941	541 aa		10.05	□□□□□ -0.8
YBX3-210	ENST00000540975	NLRC3	Q7RTR2	1065 aa		10.05	□□□□□ -0.8
YBX3-210	ENST00000540975	PIWIL2	Q8TC59	973 aa	Known RBP	10.05	□□□□□ -0.8
YBX3-210	ENST00000540975	RNF141	Q8WVD5	230 aa		10.05	□□□□□ -0.8
YBX3-210	ENST00000540975	VWCE	Q96DN2	955 aa		10.05	□□□□□ -0.8
YBX3-210	ENST00000540975	KREMEN1	Q96MU8	473 aa		10.05	□□□□□ -0.8
YBX3-210	ENST00000540975	ZNRF3	Q9ULT6	936 aa		10.05	□□□□□ -0.8
YBX3-210	ENST00000540975	MEIS3P2	A8K0S8	358 aa		10.04	□□□□□ -0.8
YBX3-210	ENST00000540975	LRRN2	O75325	713 aa		10.04	□□□□□ -0.8
YBX3-210	ENST00000540975	NME1	P15531	152 aa	Known RBP	10.04	□□□□□ -0.8
YBX3-210	ENST00000540975	RASGRP4	Q8TDF6	673 aa		10.04	□□□□□ -0.8
YBX3-210	ENST00000540975	GPRASP2	Q96D09	838 aa		10.04	□□□□□ -0.8
YBX3-210	ENST00000540975	SPATA32	Q96LK8	384 aa		10.04	□□□□□ -0.8
YBX3-210	ENST00000540975	ACBD3	Q9H3P7	528 aa		10.04	□□□□□ -0.8
YBX3-210	ENST00000540975	GINM1	Q9NU53	330 aa		10.04	□□□□□ -0.8
YBX3-210	ENST00000540975	IMPDH2	P12268	514 aa		10.03	□□□□□ -0.8
YBX3-210	ENST00000540975	TCF3	P15923	654 aa		10.03	□□□□□ -0.8
YBX3-210	ENST00000540975	POLR2B	P30876	1174 aa	Known RBP	10.03	□□□□□ -0.8
YBX3-210	ENST00000540975	COL9A2	Q14055	689 aa	Predicted RBP	10.03	□□□□□ -0.8
YBX3-210	ENST00000540975	FERD3L	Q96RJ6	166 aa		10.03	□□□□□ -0.8
YBX3-210	ENST00000540975	ATP13A1	Q9HD20	1204 aa		10.03	□□□□□ -0.8
YBX3-210	ENST00000540975	ADGRE2	Q9UHX3	823 aa		10.03	□□□□□ -0.8
YBX3-210	ENST00000540975	PPT2	Q9UMR5	302 aa		10.03	□□□□□ -0.8
YBX3-210	ENST00000540975		H3BS24	57 aa		10.02	□□□□□ -0.81
YBX3-210	ENST00000540975	FUT4	P22083	530 aa		10.02	□□□□□ -0.81
YBX3-210	ENST00000540975	GJA8	P48165	433 aa		10.02	□□□□□ -0.81
YBX3-210	ENST00000540975	UBE2F	Q969M7	185 aa		10.02	□□□□□ -0.81
YBX3-210	ENST00000540975	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	10.02	□□□□□ -0.81
YBX3-210	ENST00000540975	DUSP15	Q9H1R2	295 aa	Predicted RBP	10.02	□□□□□ -0.81
YBX3-210	ENST00000540975	ZSWIM5	Q9P217	1185 aa		10.02	□□□□□ -0.81
YBX3-210	ENST00000540975	KCNH3	Q9ULD8	1083 aa		10.02	□□□□□ -0.81
YBX3-210	ENST00000540975	EFR3B	Q9Y2G0	817 aa		10.02	□□□□□ -0.81
YBX3-210	ENST00000540975	CCNF	P41002	786 aa		10.01	□□□□□ -0.81
YBX3-210	ENST00000540975	IKZF1	Q13422	519 aa		10.01	□□□□□ -0.81
YBX3-210	ENST00000540975	PLCL1	Q15111	1095 aa		10.01	□□□□□ -0.81
YBX3-210	ENST00000540975	ANGEL2	Q5VTE6	544 aa	Known RBP	10.01	□□□□□ -0.81
YBX3-210	ENST00000540975	FBXW10	Q5XX13	1052 aa		10.01	□□□□□ -0.81
YBX3-210	ENST00000540975	INTS3	Q68E01	1043 aa	Known RBP	10.01	□□□□□ -0.81
YBX3-210	ENST00000540975	THAP5	Q7Z6K1	395 aa		10.01	□□□□□ -0.81
YBX3-210	ENST00000540975	DTWD2	Q8NBA8	298 aa		10.01	□□□□□ -0.81

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