RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 FOXD3Q9UJU5 478 aaPredicted RBP7□□□□□ -1.29
PRKDC-209ENST00000540819 SMAD7O15105 426 aaKnown RBP6.99□□□□□ -1.29
PRKDC-209ENST00000540819 KCNQ2O43526 872 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 ALDH1L1O75891 902 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 CNGA1P29973 690 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 DHX8Q14562 1220 aaKnown RBP6.99□□□□□ -1.29
PRKDC-209ENST00000540819 DDR2Q16832 855 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 DALRD3Q5D0E6 543 aaKnown RBP6.99□□□□□ -1.29
PRKDC-209ENST00000540819 HP1BP3Q5SSJ5 553 aaPredicted RBP6.99□□□□□ -1.29
PRKDC-209ENST00000540819 PCNX4Q63HM2 1172 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 CDPF1Q6NVV7 123 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 JAMLQ86YT9 394 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 TP53INP2Q8IXH6 220 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 RAVER1Q8IY67 606 aaKnown RBP6.99□□□□□ -1.29
PRKDC-209ENST00000540819 ZNF296Q8WUU4 475 aaPredicted RBP6.99□□□□□ -1.29
PRKDC-209ENST00000540819 SLC39A13Q96H72 371 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 FBXL18Q96ME1 805 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 SENP7Q9BQF6 1050 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 KRTAP9-9Q9BYP9 154 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 KRTAP9-4Q9BYQ2 154 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 ZFYVE1Q9HBF4 777 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 KCNQ5Q9NR82 932 aa6.99□□□□□ -1.29
PRKDC-209ENST00000540819 A0A0U1RQG5 324 aaPredicted RBP6.98□□□□□ -1.29
PRKDC-209ENST00000540819 IFRD1O00458 451 aaPredicted RBP6.98□□□□□ -1.29
PRKDC-209ENST00000540819 DLGAP3O95886 979 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 MYL1P05976 194 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 GBP2P32456 591 aaPredicted RBP6.98□□□□□ -1.29
PRKDC-209ENST00000540819 BRD3Q15059 726 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 PPP2R5AQ15172 486 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 ZRSR2Q15696 482 aaKnown RBP6.98□□□□□ -1.29
PRKDC-209ENST00000540819 DUSP27Q5VZP5 1158 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 NXPE4Q6UWF7 544 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 ABI1Q8IZP0 508 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 CELF2-AS1Q8N7Q2 184 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 JMYQ8N9B5 988 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 CHAC2Q8WUX2 184 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 SHDQ96IW2 340 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 TMEM74Q96NL1 305 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 MPHOSPH6Q99547 160 aaKnown RBP6.98□□□□□ -1.29
PRKDC-209ENST00000540819 ZNF700Q9H0M5 742 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 ARNT2Q9HBZ2 717 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 ZFYVE28Q9HCC9 887 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 CCDC39Q9UFE4 941 aa6.98□□□□□ -1.29
PRKDC-209ENST00000540819 MINDY4BA8MYZ0 360 aa6.97□□□□□ -1.29
PRKDC-209ENST00000540819 CYP11A1P05108 521 aa6.97□□□□□ -1.29
PRKDC-209ENST00000540819 RLBP1P12271 317 aa6.97□□□□□ -1.29
PRKDC-209ENST00000540819 GSTT1P30711 240 aa6.97□□□□□ -1.29
PRKDC-209ENST00000540819 FOXD4Q12950 439 aaPredicted RBP6.97□□□□□ -1.29
PRKDC-209ENST00000540819 TTF1Q15361 905 aaPredicted RBP6.97□□□□□ -1.29
PRKDC-209ENST00000540819 USPL1Q5W0Q7 1092 aa6.97□□□□□ -1.29
PRKDC-209ENST00000540819 DDX54Q8TDD1 881 aaKnown RBP6.97□□□□□ -1.29
PRKDC-209ENST00000540819 BCO2Q9BYV7 579 aa6.97□□□□□ -1.29
PRKDC-209ENST00000540819 LATS2Q9NRM7 1088 aa6.97□□□□□ -1.29
PRKDC-209ENST00000540819 RAD18Q9NS91 495 aa6.97□□□□□ -1.29
PRKDC-209ENST00000540819 SUPT16HQ9Y5B9 1047 aaKnown RBP6.97□□□□□ -1.29
PRKDC-209ENST00000540819 A0A096LPE4 126 aa6.96□□□□□ -1.3
PRKDC-209ENST00000540819 A0A1W2PPZ6 126 aa6.96□□□□□ -1.3
PRKDC-209ENST00000540819 PTMSP20962 102 aa6.96□□□□□ -1.3
PRKDC-209ENST00000540819 CYP27A1Q02318 531 aa6.96□□□□□ -1.3
PRKDC-209ENST00000540819 MAP7Q14244 749 aa6.96□□□□□ -1.3
PRKDC-209ENST00000540819 MSMPQ1L6U9 139 aa6.96□□□□□ -1.3
PRKDC-209ENST00000540819 PEAR1Q5VY43 1037 aaPredicted RBP6.96□□□□□ -1.3
PRKDC-209ENST00000540819 ZAR1Q86SH2 424 aa6.96□□□□□ -1.3
PRKDC-209ENST00000540819 VSIG10LQ86VR7 867 aa6.96□□□□□ -1.3
PRKDC-209ENST00000540819 C2CD4AQ8NCU7 369 aaPredicted RBP6.96□□□□□ -1.3
PRKDC-209ENST00000540819 NAP1L4Q99733 375 aaKnown RBP6.96□□□□□ -1.3
PRKDC-209ENST00000540819 SFMBT1Q9UHJ3 866 aa6.96□□□□□ -1.3
PRKDC-209ENST00000540819 MCM8Q9UJA3 840 aa6.96□□□□□ -1.3
PRKDC-209ENST00000540819 MAPK8IP1Q9UQF2 711 aa6.96□□□□□ -1.3
PRKDC-209ENST00000540819 METTL12A8MUP2 240 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 ASMTLO95671 621 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 POLR3DP05423 398 aaPredicted RBP6.95□□□□□ -1.3
PRKDC-209ENST00000540819 POU3F3P20264 500 aaPredicted RBP6.95□□□□□ -1.3
PRKDC-209ENST00000540819 MAOBP27338 520 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 PCDH1Q08174 1060 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 POU4F3Q15319 338 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 MTERF2Q49AM1 385 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 PPP4R4Q6NUP7 873 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 FBXL19Q6PCT2 694 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.95□□□□□ -1.3
PRKDC-209ENST00000540819 DYMQ7RTS9 669 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 DDX42Q86XP3 938 aaKnown RBP eCLIP6.95□□□□□ -1.3
PRKDC-209ENST00000540819 GPATCH11Q8N954 259 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 EZH1Q92800 747 aaPredicted RBP6.95□□□□□ -1.3
PRKDC-209ENST00000540819 ASIC4Q96FT7 647 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 CLEC4MQ9H2X3 399 aaPredicted RBP6.95□□□□□ -1.3
PRKDC-209ENST00000540819 ACTR10Q9NZ32 417 aa6.95□□□□□ -1.3
PRKDC-209ENST00000540819 GREM1O60565 184 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 PRNPP04156 253 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 NFICP08651 508 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 ADH5P11766 374 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 ADMP35318 185 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 STAT3P40763 770 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 CCDC85BQ15834 202 aaPredicted RBP6.94□□□□□ -1.3
PRKDC-209ENST00000540819 TM4SF20Q53R12 229 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 AKAP4Q5JQC9 854 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 SYCP2LQ5T4T6 812 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 KRBA2Q6ZNG9 492 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 THNSL2Q86YJ6 484 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 SHISA5Q8N114 240 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms