RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TCP11L1Q9NUJ3 509 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 NLRP12P59046 1061 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 DIXDC1Q155Q3 683 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 TXNRD1Q16881 649 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 SRBD1Q8N5C6 995 aaKnown RBP15.86■□□□□ 0.13
RTN3-210ENST00000540798 TBC1D16Q8TBP0 767 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 FAM163AQ96GL9 167 aaPredicted RBP15.86■□□□□ 0.13
RTN3-210ENST00000540798 MRFAP1L1Q96HT8 127 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 ARID3AQ99856 593 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 NAT10Q9H0A0 1025 aaKnown RBP15.86■□□□□ 0.13
RTN3-210ENST00000540798 SPTLC3Q9NUV7 552 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 COL11A2P13942 1736 aaPredicted RBP15.86■□□□□ 0.13
RTN3-210ENST00000540798 A0A087WWV3 80 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 XBP1P17861 261 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 DGKHQ86XP1 1220 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 IL17RBQ9NRM6 502 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 POLLQ9UGP5 575 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 MYH1P12882 1939 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 GPR75-ASB3A0A0A6YYF3 556 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 GOLGA6L19H0YKK7 550 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 TERF1P54274 439 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 AKAP17AQ02040 695 aaKnown RBP15.85■□□□□ 0.13
RTN3-210ENST00000540798 MPNDQ8N594 471 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 TRIM5Q9C035 493 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 V9GY48 417 aaPredicted RBP15.85■□□□□ 0.13
RTN3-210ENST00000540798 DPCR1Q3MIW9 517 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 VPS54Q9P1Q0 977 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 PCDHB6Q9Y5E3 794 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 FAM205AQ6ZU69 1335 aa15.85■□□□□ 0.13
RTN3-210ENST00000540798 KRT2P35908 639 aa15.84■□□□□ 0.13
RTN3-210ENST00000540798 USP5P45974 858 aa15.84■□□□□ 0.13
RTN3-210ENST00000540798 SRPRBQ9Y5M8 271 aaKnown RBP15.84■□□□□ 0.13
RTN3-210ENST00000540798 GAKO14976 1311 aa15.84■□□□□ 0.13
RTN3-210ENST00000540798 TSPY2A6NKD2 308 aa15.84■□□□□ 0.13
RTN3-210ENST00000540798 SPC24Q8NBT2 197 aa15.84■□□□□ 0.13
RTN3-210ENST00000540798 CTCFLQ8NI51 663 aaPredicted RBP15.84■□□□□ 0.13
RTN3-210ENST00000540798 MDM2Q00987 491 aaPredicted RBP15.83■□□□□ 0.13
RTN3-210ENST00000540798 CCDC178Q5BJE1 867 aa15.83■□□□□ 0.13
RTN3-210ENST00000540798 SP8Q8IXZ3 490 aa15.83■□□□□ 0.13
RTN3-210ENST00000540798 KIAA1524Q8TCG1 905 aa15.83■□□□□ 0.13
RTN3-210ENST00000540798 KCNH3Q9ULD8 1083 aa15.83■□□□□ 0.13
RTN3-210ENST00000540798 CEP131Q9UPN4 1083 aa15.83■□□□□ 0.13
RTN3-210ENST00000540798 KRBA2Q6ZNG9 492 aa15.83■□□□□ 0.12
RTN3-210ENST00000540798 BBXQ8WY36 941 aaPredicted RBP15.83■□□□□ 0.12
RTN3-210ENST00000540798 AKT1S1Q96B36 256 aa15.83■□□□□ 0.12
RTN3-210ENST00000540798 SNED1Q8TER0 1413 aa15.83■□□□□ 0.12
RTN3-210ENST00000540798 EARS2Q5JPH6 523 aaKnown RBP15.83■□□□□ 0.12
RTN3-210ENST00000540798 METTL16Q86W50 562 aaKnown RBP15.83■□□□□ 0.12
RTN3-210ENST00000540798 AOPEPQ8N6M6 819 aa15.83■□□□□ 0.12
RTN3-210ENST00000540798 CABP5Q9NP86 173 aa15.83■□□□□ 0.12
RTN3-210ENST00000540798 RGPD3A6NKT7 1758 aaPredicted RBP15.83■□□□□ 0.12
RTN3-210ENST00000540798 RGPD4Q7Z3J3 1758 aa15.83■□□□□ 0.12
RTN3-210ENST00000540798 BTDP43251 543 aa15.82■□□□□ 0.12
RTN3-210ENST00000540798 TFAP4Q01664 338 aa15.82■□□□□ 0.12
RTN3-210ENST00000540798 GRIN1Q05586 938 aa15.82■□□□□ 0.12
RTN3-210ENST00000540798 PFKFB3Q16875 520 aaPredicted RBP15.82■□□□□ 0.12
RTN3-210ENST00000540798 LONRF3Q496Y0 759 aa15.82■□□□□ 0.12
RTN3-210ENST00000540798 TBC1D22AQ8WUA7 517 aa15.82■□□□□ 0.12
RTN3-210ENST00000540798 TGFBRAP1Q8WUH2 860 aa15.82■□□□□ 0.12
RTN3-210ENST00000540798 DYNLL2Q96FJ2 89 aa15.82■□□□□ 0.12
RTN3-210ENST00000540798 NOL10Q9BSC4 688 aaKnown RBP15.82■□□□□ 0.12
RTN3-210ENST00000540798 TAOK2Q9UL54 1235 aa15.82■□□□□ 0.12
RTN3-210ENST00000540798 BECN2A8MW95 431 aa15.82■□□□□ 0.12
RTN3-210ENST00000540798 RHBDL3P58872 404 aa15.82■□□□□ 0.12
RTN3-210ENST00000540798 NOLC1Q14978 699 aaKnown RBP eCLIP15.82■□□□□ 0.125e-6■□□□□ 9.2
RTN3-210ENST00000540798 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.81■□□□□ 0.12
RTN3-210ENST00000540798 PLSCR1O15162 318 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 PTGS1P23219 599 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 PLCD1P51178 756 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 NCAPHQ15003 741 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 ZNF827Q17R98 1081 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 hCG_1642624A0A1W2PR95 340 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 FAM205CA6NFA0 338 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 PPEF1O14829 653 aaPredicted RBP15.81■□□□□ 0.12
RTN3-210ENST00000540798 SCG2P13521 617 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 KIF5BP33176 963 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 GRM4Q14833 912 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 RGS17Q9UGC6 210 aaPredicted RBP15.81■□□□□ 0.12
RTN3-210ENST00000540798 PYCARDQ9ULZ3 195 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 ATP6V0A2Q9Y487 856 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 IKBKBO14920 756 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 PLCG2P16885 1265 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 RASA1P20936 1047 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 C16orf86Q6ZW13 317 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 AMOTL1Q8IY63 956 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 KAT14Q9H8E8 782 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 CLIP2Q9UDT6 1046 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 NRBP1Q9UHY1 535 aa15.81■□□□□ 0.12
RTN3-210ENST00000540798 ZHX1Q9UKY1 873 aaPredicted RBP15.81■□□□□ 0.12
RTN3-210ENST00000540798 ZNF646O15015 1829 aaPredicted RBP15.8■□□□□ 0.12
RTN3-210ENST00000540798 TNS1Q9HBL0 1735 aaKnown RBP15.8■□□□□ 0.12
RTN3-210ENST00000540798 NT5DC1Q5TFE4 455 aa15.8■□□□□ 0.12
RTN3-210ENST00000540798 CCDC186Q7Z3E2 898 aa15.8■□□□□ 0.12
RTN3-210ENST00000540798 TRIM75PA6NK02 468 aa15.8■□□□□ 0.12
RTN3-210ENST00000540798 PNOCQ13519 176 aa15.8■□□□□ 0.12
RTN3-210ENST00000540798 FOXP4Q8IVH2 680 aaPredicted RBP15.8■□□□□ 0.12
RTN3-210ENST00000540798 SLF2Q8IX21 1173 aa15.8■□□□□ 0.12
RTN3-210ENST00000540798 PNMA1Q8ND90 353 aa15.8■□□□□ 0.12
RTN3-210ENST00000540798 SH3GLB2Q9NR46 395 aa15.8■□□□□ 0.12
RTN3-210ENST00000540798 FAM13BQ9NYF5 915 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms