RNA–Protein interactions for RNA: ENST00000540756.5

TTC3-225, Transcript of tetratricopeptide repeat domain 3, human

TSL 2 BASIC

Gene TTC3, Length 2,025 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-225	ENST00000540756	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	PNMA1	Q8ND90	353 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	AGBL3	Q8NEM8	1001 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	TMEM47	Q9BQJ4	181 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	MTMR7	Q9Y216	660 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	hCG_1642624	A0A1W2PR95	340 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	HLA-DOA	P06340	250 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	DLGAP5	Q15398	846 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	TPRN	Q4KMQ1	711 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	RASGRP2	Q7LDG7	609 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	CLEC10A	Q8IUN9	316 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	HDAC9	Q9UKV0	1011 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	MYH6	P13533	1939 aa		28.55	■■■□□ 2.16
TTC3-225	ENST00000540756	PTMS	P20962	102 aa		28.54	■■■□□ 2.16
TTC3-225	ENST00000540756	TCP10L2	B9ZVM9	353 aa		28.53	■■■□□ 2.16
TTC3-225	ENST00000540756	NT5C2	P49902	561 aa		28.53	■■■□□ 2.16
TTC3-225	ENST00000540756	STK36	Q9NRP7	1315 aa		28.53	■■■□□ 2.16
TTC3-225	ENST00000540756	LTBP3	Q9NS15	1303 aa		28.53	■■■□□ 2.16
TTC3-225	ENST00000540756	CALM1	P0DP23	149 aa		28.53	■■■□□ 2.16
TTC3-225	ENST00000540756	CALM2	P0DP24	149 aa		28.53	■■■□□ 2.16
TTC3-225	ENST00000540756	CALM3	P0DP25	149 aa		28.53	■■■□□ 2.16
TTC3-225	ENST00000540756	SHROOM1	Q2M3G4	852 aa	Predicted RBP	28.53	■■■□□ 2.16
TTC3-225	ENST00000540756	SRBD1	Q8N5C6	995 aa	Known RBP	28.52	■■■□□ 2.16
TTC3-225	ENST00000540756	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	28.52	■■■□□ 2.16
TTC3-225	ENST00000540756	ZNF70	Q9UC06	446 aa	Predicted RBP	28.52	■■■□□ 2.16
TTC3-225	ENST00000540756	MYH15	Q9Y2K3	1946 aa		28.52	■■■□□ 2.16
TTC3-225	ENST00000540756	KIF28P	B7ZC32	967 aa		28.52	■■■□□ 2.16
TTC3-225	ENST00000540756	SKOR2	Q2VWA4	1001 aa	Predicted RBP	28.52	■■■□□ 2.16
TTC3-225	ENST00000540756	TMEM87A	Q8NBN3	555 aa		28.52	■■■□□ 2.16
TTC3-225	ENST00000540756	NPM3	O75607	178 aa	Known RBP	28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	PPP2R5B	Q15173	497 aa		28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	KLHL40	Q2TBA0	621 aa		28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	KRT40	Q6A162	431 aa		28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	TMTC3	Q6ZXV5	915 aa		28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	TRIM22	Q8IYM9	498 aa		28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	STAG2	Q8N3U4	1231 aa		28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	CTCFL	Q8NI51	663 aa	Predicted RBP	28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	FTO	Q9C0B1	505 aa	Known RBP eCLIP	28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	EHD4	Q9H223	541 aa		28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	DHX36	Q9H2U1	1008 aa	Known RBP	28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	PI4KB	Q9UBF8	816 aa		28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	SWAP70	Q9UH65	585 aa		28.51	■■■□□ 2.15
TTC3-225	ENST00000540756	EGFR	P00533	1210 aa		28.5	■■■□□ 2.15
TTC3-225	ENST00000540756	EIF6	P56537	245 aa	Known RBP	28.5	■■■□□ 2.15
TTC3-225	ENST00000540756	RBM28	Q9NW13	759 aa	Known RBP	28.5	■■■□□ 2.15
TTC3-225	ENST00000540756	KRT85	P78386	507 aa		28.5	■■■□□ 2.15
TTC3-225	ENST00000540756	NBPF9	Q3BBW0	867 aa		28.5	■■■□□ 2.15
TTC3-225	ENST00000540756	CCDC178	Q5BJE1	867 aa		28.5	■■■□□ 2.15
TTC3-225	ENST00000540756		V9GY48	417 aa	Predicted RBP	28.5	■■■□□ 2.15
TTC3-225	ENST00000540756	SHISA4	Q96DD7	197 aa		28.49	■■■□□ 2.15
TTC3-225	ENST00000540756	SCAF8	Q9UPN6	1271 aa	Known RBP	28.49	■■■□□ 2.15
TTC3-225	ENST00000540756	ENTPD3	O75355	529 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	TNIP1	Q15025	636 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	PKN1	Q16512	942 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	PLIN4	Q96Q06	1357 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	DEXI	O95424	95 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	NOV	P48745	357 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	CEBPZ	Q03701	1054 aa	Known RBP	28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	SPDYE2	Q495Y8	402 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	VEZT	Q9HBM0	779 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	MTMR4	Q9NYA4	1195 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	MAD2L2	Q9UI95	211 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	GJA3	Q9Y6H8	435 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	CNTNAP5	Q8WYK1	1306 aa		28.48	■■■□□ 2.15
TTC3-225	ENST00000540756	IGKV6D-41	A0A0C4DH26	115 aa		28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	FZD9	O00144	591 aa		28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	WNT10B	O00744	389 aa		28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	KIF23	Q02241	960 aa	Predicted RBP	28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	GSE1	Q14687	1217 aa		28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	ARHGAP27	Q6ZUM4	889 aa		28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	CDAN1	Q8IWY9	1227 aa		28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	PIBF1	Q8WXW3	757 aa		28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	RNF26	Q9BY78	433 aa	Predicted RBP	28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	RBM27	Q9P2N5	1060 aa	Known RBP	28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	KCNJ14	Q9UNX9	436 aa		28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	MPHOSPH10	O00566	681 aa	Known RBP	28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	GOLGA8H	P0CJ92	632 aa		28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	ZBED3	Q96IU2	234 aa	Predicted RBP	28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	MYOZ2	Q9NPC6	264 aa		28.47	■■■□□ 2.15
TTC3-225	ENST00000540756	ZNF541	Q9H0D2	1346 aa		28.46	■■■□□ 2.15
TTC3-225	ENST00000540756	CNTNAP1	P78357	1384 aa		28.46	■■■□□ 2.15
TTC3-225	ENST00000540756	ATRNL1	Q5VV63	1379 aa		28.46	■■■□□ 2.15
TTC3-225	ENST00000540756	GRM4	Q14833	912 aa		28.46	■■■□□ 2.15
TTC3-225	ENST00000540756	SLC35G1	Q2M3R5	365 aa		28.46	■■■□□ 2.15
TTC3-225	ENST00000540756	RBM26	Q5T8P6	1007 aa	Known RBP	28.46	■■■□□ 2.15
TTC3-225	ENST00000540756	MTMR14	Q8NCE2	650 aa		28.46	■■■□□ 2.15
TTC3-225	ENST00000540756	TMOD2	Q9NZR1	351 aa		28.46	■■■□□ 2.15
TTC3-225	ENST00000540756	VEGFA	P15692	232 aa	Predicted RBP	28.45	■■■□□ 2.15
TTC3-225	ENST00000540756	CAVIN1	Q6NZI2	390 aa	Known RBP	28.45	■■■□□ 2.15
TTC3-225	ENST00000540756	CSRNP1	Q96S65	589 aa		28.45	■■■□□ 2.15
TTC3-225	ENST00000540756	GREB1L	Q9C091	1923 aa	Predicted RBP	28.45	■■■□□ 2.14
TTC3-225	ENST00000540756	PRPF3	O43395	683 aa	Known RBP	28.45	■■■□□ 2.14
TTC3-225	ENST00000540756	GMPS	P49915	693 aa	Predicted RBP	28.45	■■■□□ 2.14
TTC3-225	ENST00000540756	LRRC47	Q8N1G4	583 aa	Known RBP	28.45	■■■□□ 2.14
TTC3-225	ENST00000540756	TOP1	P11387	765 aa	Known RBP	28.44	■■■□□ 2.14
TTC3-225	ENST00000540756	LEO1	Q8WVC0	666 aa	Predicted RBP	28.44	■■■□□ 2.14
TTC3-225	ENST00000540756	WASF1	Q92558	559 aa		28.44	■■■□□ 2.14
TTC3-225	ENST00000540756	USP28	Q96RU2	1077 aa		28.44	■■■□□ 2.14
TTC3-225	ENST00000540756	CPVL	Q9H3G5	476 aa		28.44	■■■□□ 2.14
TTC3-225	ENST00000540756	RRP1B	Q14684	758 aa	Known RBP	28.43	■■■□□ 2.14

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms