RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 MTMR4Q9NYA4 1195 aa12.44□□□□□ -0.42
VPS33A-204ENST00000540669 CYP46A1Q9Y6A2 500 aa12.44□□□□□ -0.42
VPS33A-204ENST00000540669 TMEM88BA6NKF7 163 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 INPP5BP32019 993 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 TFAP4Q01664 338 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 FMR1Q06787 632 aaKnown RBP eCLIP12.43□□□□□ -0.42
VPS33A-204ENST00000540669 TRDNQ13061 729 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 CERKLQ49MI3 558 aaPredicted RBP12.43□□□□□ -0.42
VPS33A-204ENST00000540669 FAM47AQ5JRC9 791 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 MIGA2Q7L4E1 593 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 DGKHQ86XP1 1220 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 SCYL3Q8IZE3 742 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 MKL1Q969V6 931 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 CEP95Q96GE4 821 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 ZSCAN10Q96SZ4 725 aaPredicted RBP12.43□□□□□ -0.42
VPS33A-204ENST00000540669 SENP2Q9HC62 589 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 GPHNQ9NQX3 736 aaPredicted RBP12.43□□□□□ -0.42
VPS33A-204ENST00000540669 CREBZFQ9NS37 354 aa12.43□□□□□ -0.42
VPS33A-204ENST00000540669 ABT1Q9ULW3 272 aaKnown RBP12.43□□□□□ -0.42
VPS33A-204ENST00000540669 ANGEL1Q9UNK9 670 aaKnown RBP12.43□□□□□ -0.42
VPS33A-204ENST00000540669 RANBP6O60518 1105 aaKnown RBP12.42□□□□□ -0.42
VPS33A-204ENST00000540669 NMT2O60551 498 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 GDF11O95390 407 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 GH2P01242 217 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 ASNSP08243 561 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 SNHG28P0DPA3 235 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 AK2P54819 239 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 ST3GAL1Q11201 340 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 ABCB5Q2M3G0 1257 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 CST9Q5W186 159 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 CLEC10AQ8IUN9 316 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 TCEANC2Q96MN5 208 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 WRNIP1Q96S55 665 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 MKNK2Q9HBH9 465 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 NYAP2Q9P242 653 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 FZD1Q9UP38 647 aa12.42□□□□□ -0.42
VPS33A-204ENST00000540669 TSPY2A6NKD2 308 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 TSPY3P0CV98 308 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 TSPY8P0CW00 308 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 NEK4P51957 841 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 TROAPQ12815 778 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 VGLL4Q14135 290 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 SEPT2Q15019 361 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 CCDC178Q5BJE1 867 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 APOA5Q6Q788 366 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 PAXIP1Q6ZW49 1069 aaPredicted RBP12.41□□□□□ -0.42
VPS33A-204ENST00000540669 IQCA1Q86XH1 822 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 ZNF444Q8N0Y2 327 aaPredicted RBP12.41□□□□□ -0.42
VPS33A-204ENST00000540669 WDR18Q9BV38 432 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 ZNF408Q9H9D4 720 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 KANSL2Q9H9L4 492 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 HPS5Q9UPZ3 1129 aa12.41□□□□□ -0.42
VPS33A-204ENST00000540669 A0A1W2PRG0 241 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 SPDYE5A6NIY4 337 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 PPP1R12BO60237 982 aaPredicted RBP12.4□□□□□ -0.42
VPS33A-204ENST00000540669 RRP12Q5JTH9 1297 aaKnown RBP12.4□□□□□ -0.42
VPS33A-204ENST00000540669 Q6ZUG5 572 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 CHST3Q7LGC8 479 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 STK11IPQ8N1F8 1099 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 C12orf42Q96LP6 360 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 MAP3K14Q99558 947 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 LRRC2Q9BYS8 371 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 TBC1D2Q9BYX2 928 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 GBA2Q9HCG7 927 aaPredicted RBP12.4□□□□□ -0.42
VPS33A-204ENST00000540669 PDRG1Q9NUG6 133 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.4□□□□□ -0.42
VPS33A-204ENST00000540669 BRPF3Q9ULD4 1205 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 TMX2Q9Y320 296 aa12.4□□□□□ -0.42
VPS33A-204ENST00000540669 DDAH1O94760 285 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 LARGE1O95461 756 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 TTLL1O95922 423 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 PTPRAP18433 802 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 ECE1P42892 770 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 IREB2P48200 963 aaKnown RBP12.39□□□□□ -0.43
VPS33A-204ENST00000540669 MAP3K9P80192 1104 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 ICA1Q05084 483 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 TMEM67Q5HYA8 995 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 PPP4R3BQ5MIZ7 849 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 MOB2Q70IA6 237 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 ANKRD13AQ8IZ07 590 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 C2orf69Q8N8R5 385 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 GMCL1P1Q8NEA9 526 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 BRF1Q92994 677 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 ZKSCAN4Q969J2 545 aaPredicted RBP12.39□□□□□ -0.43
VPS33A-204ENST00000540669 TMEM47Q9BQJ4 181 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 ZKSCAN3Q9BRR0 538 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 UBAC1Q9BSL1 405 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 TRIM34Q9BYJ4 488 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 KIAA1683Q9H0B3 1180 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 TPCN1Q9ULQ1 816 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 KCNH4Q9UQ05 1017 aa12.39□□□□□ -0.43
VPS33A-204ENST00000540669 IFIT3O14879 490 aaKnown RBP12.38□□□□□ -0.43
VPS33A-204ENST00000540669 ST18O60284 1047 aa12.38□□□□□ -0.43
VPS33A-204ENST00000540669 CELF2O95319 508 aaKnown RBP12.38□□□□□ -0.43
VPS33A-204ENST00000540669 TOP1P11387 765 aaKnown RBP12.38□□□□□ -0.43
VPS33A-204ENST00000540669 EEF2P13639 858 aaKnown RBP12.38□□□□□ -0.43
VPS33A-204ENST00000540669 MCM2P49736 904 aa12.38□□□□□ -0.43
VPS33A-204ENST00000540669 CUL4AQ13619 759 aa12.38□□□□□ -0.43
VPS33A-204ENST00000540669 MOGSQ13724 837 aa12.38□□□□□ -0.43
VPS33A-204ENST00000540669 WTAPQ15007 396 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms