RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 IGHDP01880 384 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 GUCY1A2P33402 732 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 CDK8P49336 464 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 EVX2Q03828 476 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 SEPT2Q15019 361 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 SLC9C1Q4G0N8 1177 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 SLC44A5Q8NCS7 719 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 DYNLL2Q96FJ2 89 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 NACAP1Q9BZK3 213 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 EMILIN3Q9NT22 766 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 PTCH2Q9Y6C5 1203 aa14.15□□□□□ -0.14
SYNE1-238ENST00000540663 CYP2D7A0A087X1C5 515 aa14.14□□□□□ -0.15
SYNE1-238ENST00000540663 PATL2C9JE40 543 aaKnown RBP14.14□□□□□ -0.15
SYNE1-238ENST00000540663 M0R2C6 588 aa14.14□□□□□ -0.15
SYNE1-238ENST00000540663 TDO2P48775 406 aa14.14□□□□□ -0.15
SYNE1-238ENST00000540663 ANKRD13CQ8N6S4 541 aa14.14□□□□□ -0.15
SYNE1-238ENST00000540663 SH2D4AQ9H788 454 aa14.14□□□□□ -0.15
SYNE1-238ENST00000540663 ZNF287Q9HBT7 754 aa14.14□□□□□ -0.15
SYNE1-238ENST00000540663 MORF4L1Q9UBU8 362 aa14.14□□□□□ -0.15
SYNE1-238ENST00000540663 CENPFP49454 3210 aa14.14□□□□□ -0.15
SYNE1-238ENST00000540663 MYH8P13535 1937 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 ZSWIM8A7E2V4 1837 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 USP17L15C9J2P7 530 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 USP17L13C9JLJ4 530 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 USP17L11C9JVI0 530 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 USP17L18D6R9N7 530 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 USP17L22D6RA61 530 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 USP17L17D6RBQ6 530 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 USP17L19D6RCP7 530 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 USP17L20D6RJB6 530 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 APPP05067 770 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 CTGFP29279 349 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 SOX10P56693 466 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 HERVK_113P62684 666 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 USP17L24Q0WX57 530 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 B4GALNT3Q6L9W6 998 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 ACER1Q8TDN7 264 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 OSBPL3Q9H4L5 887 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 ARHGEF10LQ9HCE6 1279 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 EPB41L4AQ9HCS5 686 aaPredicted RBP14.13□□□□□ -0.15
SYNE1-238ENST00000540663 MYPNQ86TC9 1320 aa14.13□□□□□ -0.15
SYNE1-238ENST00000540663 MGAMO43451 1857 aa14.12□□□□□ -0.15
SYNE1-238ENST00000540663 TNPO2O14787 897 aaKnown RBP14.12□□□□□ -0.15
SYNE1-238ENST00000540663 AKR1B1P15121 316 aa14.12□□□□□ -0.15
SYNE1-238ENST00000540663 VCAM1P19320 739 aa14.12□□□□□ -0.15
SYNE1-238ENST00000540663 MLLT1Q03111 559 aaPredicted RBP14.12□□□□□ -0.15
SYNE1-238ENST00000540663 ICA1Q05084 483 aa14.12□□□□□ -0.15
SYNE1-238ENST00000540663 ZYXQ15942 572 aaKnown RBP14.12□□□□□ -0.15
SYNE1-238ENST00000540663 RAET1EQ8TD07 263 aa14.12□□□□□ -0.15
SYNE1-238ENST00000540663 COA7Q96BR5 231 aa14.12□□□□□ -0.15
SYNE1-238ENST00000540663 ZNF333Q96JL9 665 aa14.12□□□□□ -0.15
SYNE1-238ENST00000540663 P2RX7Q99572 595 aaKnown RBP14.12□□□□□ -0.15
SYNE1-238ENST00000540663 HELLSQ9NRZ9 838 aa14.12□□□□□ -0.15
SYNE1-238ENST00000540663 MINDY4BA8MYZ0 360 aa14.11□□□□□ -0.15
SYNE1-238ENST00000540663 PRKCZQ05513 592 aa14.11□□□□□ -0.15
SYNE1-238ENST00000540663 PLEKHM2Q8IWE5 1019 aa14.11□□□□□ -0.15
SYNE1-238ENST00000540663 IFNL3Q8IZI9 196 aa14.11□□□□□ -0.15
SYNE1-238ENST00000540663 SLAIN1Q8ND83 568 aa14.11□□□□□ -0.15
SYNE1-238ENST00000540663 GPRC5AQ8NFJ5 357 aa14.11□□□□□ -0.15
SYNE1-238ENST00000540663 LPAR1Q92633 364 aa14.11□□□□□ -0.15
SYNE1-238ENST00000540663 SEC62Q99442 399 aaKnown RBP14.11□□□□□ -0.15
SYNE1-238ENST00000540663 KANSL2Q9H9L4 492 aa14.11□□□□□ -0.15
SYNE1-238ENST00000540663 MKNK2Q9HBH9 465 aa14.11□□□□□ -0.15
SYNE1-238ENST00000540663 TMX2Q9Y320 296 aa14.11□□□□□ -0.15
SYNE1-238ENST00000540663 RBBP6Q7Z6E9 1792 aaKnown RBP14.1□□□□□ -0.15
SYNE1-238ENST00000540663 A0A1W2PRG0 241 aa14.1□□□□□ -0.15
SYNE1-238ENST00000540663 TRIM6-TRIM34B2RNG4 842 aa14.1□□□□□ -0.15
SYNE1-238ENST00000540663 SMIM22K7EJ46 135 aa14.1□□□□□ -0.15
SYNE1-238ENST00000540663 SLC3A2P08195 630 aaKnown RBP14.1□□□□□ -0.15
SYNE1-238ENST00000540663 GRK4P32298 578 aa14.1□□□□□ -0.15
SYNE1-238ENST00000540663 IRF5Q13568 498 aa14.1□□□□□ -0.15
SYNE1-238ENST00000540663 LBX2Q6XYB7 198 aa14.1□□□□□ -0.15
SYNE1-238ENST00000540663 CATSPERGQ6ZRH7 1159 aa14.1□□□□□ -0.15
SYNE1-238ENST00000540663 NAPBQ9H115 298 aa14.1□□□□□ -0.15
SYNE1-238ENST00000540663 RPAP3Q9H6T3 665 aaPredicted RBP14.1□□□□□ -0.15
SYNE1-238ENST00000540663 RABGAP1Q9Y3P9 1069 aa14.1□□□□□ -0.15
SYNE1-238ENST00000540663 ECM2O94769 699 aaPredicted RBP14.09□□□□□ -0.15
SYNE1-238ENST00000540663 RASA1P20936 1047 aa14.09□□□□□ -0.15
SYNE1-238ENST00000540663 MAPK4P31152 587 aa14.09□□□□□ -0.15
SYNE1-238ENST00000540663 PDE4BQ07343 736 aa14.09□□□□□ -0.15
SYNE1-238ENST00000540663 MCMDC2Q4G0Z9 681 aa14.09□□□□□ -0.15
SYNE1-238ENST00000540663 SIAH1Q8IUQ4 282 aa14.09□□□□□ -0.15
SYNE1-238ENST00000540663 TMEM106CQ9BVX2 250 aa14.09□□□□□ -0.15
SYNE1-238ENST00000540663 VCPKMTQ9H867 229 aa14.09□□□□□ -0.15
SYNE1-238ENST00000540663 RBPJLQ9UBG7 517 aa14.09□□□□□ -0.15
SYNE1-238ENST00000540663 TNRC18O15417 2968 aaPredicted RBP14.09□□□□□ -0.15
SYNE1-238ENST00000540663 FLT3LGP49771 235 aa14.08□□□□□ -0.16
SYNE1-238ENST00000540663 MFAP1P55081 439 aaKnown RBP14.08□□□□□ -0.16
SYNE1-238ENST00000540663 ERVK-9P63128 1117 aa14.08□□□□□ -0.16
SYNE1-238ENST00000540663 ERVK-24P63145 666 aa14.08□□□□□ -0.16
SYNE1-238ENST00000540663 CCNA1P78396 465 aa14.08□□□□□ -0.16
SYNE1-238ENST00000540663 IRX6P78412 446 aaPredicted RBP14.08□□□□□ -0.16
SYNE1-238ENST00000540663 ALX1Q15699 326 aa14.08□□□□□ -0.16
SYNE1-238ENST00000540663 PXYLP1Q8TE99 480 aa14.08□□□□□ -0.16
SYNE1-238ENST00000540663 SH3TC2Q8TF17 1288 aa14.08□□□□□ -0.16
SYNE1-238ENST00000540663 RILPL2Q969X0 211 aa14.08□□□□□ -0.16
SYNE1-238ENST00000540663 TXNRD2Q9NNW7 524 aa14.08□□□□□ -0.16
SYNE1-238ENST00000540663 HOXC10Q9NYD6 342 aa14.08□□□□□ -0.16
SYNE1-238ENST00000540663 GABRQQ9UN88 632 aa14.08□□□□□ -0.16
SYNE1-238ENST00000540663 GREB1LQ9C091 1923 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms