RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 LBX2Q6XYB7 198 aa14.6□□□□□ -0.07
CBX3P4-202ENST00000540428 CATSPERGQ6ZRH7 1159 aa14.6□□□□□ -0.07
CBX3P4-202ENST00000540428 AACSQ86V21 672 aa14.6□□□□□ -0.07
CBX3P4-202ENST00000540428 APBA2Q99767 749 aa14.6□□□□□ -0.07
CBX3P4-202ENST00000540428 GDF15Q99988 308 aa14.6□□□□□ -0.07
CBX3P4-202ENST00000540428 RIOK1Q9BRS2 568 aaKnown RBP14.6□□□□□ -0.07
CBX3P4-202ENST00000540428 PAGR1Q9BTK6 254 aa14.6□□□□□ -0.07
CBX3P4-202ENST00000540428 CABP5Q9NP86 173 aa14.6□□□□□ -0.07
CBX3P4-202ENST00000540428 STAP2Q9UGK3 403 aa14.6□□□□□ -0.07
CBX3P4-202ENST00000540428 CDK5RAP2Q96SN8 1893 aa14.59□□□□□ -0.07
CBX3P4-202ENST00000540428 GLRX3O76003 335 aaKnown RBP14.59□□□□□ -0.07
CBX3P4-202ENST00000540428 CACNB2Q08289 660 aaPredicted RBP14.59□□□□□ -0.07
CBX3P4-202ENST00000540428 RAB3GAP1Q15042 981 aa14.59□□□□□ -0.07
CBX3P4-202ENST00000540428 C7orf61Q8IZ16 206 aa14.59□□□□□ -0.07
CBX3P4-202ENST00000540428 EXOC6BQ9Y2D4 811 aa14.59□□□□□ -0.07
CBX3P4-202ENST00000540428 NDUFB9Q9Y6M9 179 aa14.59□□□□□ -0.07
CBX3P4-202ENST00000540428 PLXNB2O15031 1838 aa14.59□□□□□ -0.07
CBX3P4-202ENST00000540428 CNMDO75829 334 aa14.58□□□□□ -0.08
CBX3P4-202ENST00000540428 VCAM1P19320 739 aa14.58□□□□□ -0.08
CBX3P4-202ENST00000540428 SHMT1P34896 483 aa14.58□□□□□ -0.08
CBX3P4-202ENST00000540428 MAP2K5Q13163 448 aa14.58□□□□□ -0.08
CBX3P4-202ENST00000540428 ZYXQ15942 572 aaKnown RBP14.58□□□□□ -0.08
CBX3P4-202ENST00000540428 RHPN1Q8TCX5 695 aa14.58□□□□□ -0.08
CBX3P4-202ENST00000540428 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.58□□□□□ -0.08
CBX3P4-202ENST00000540428 CWC22Q9HCG8 908 aaKnown RBP14.58□□□□□ -0.08
CBX3P4-202ENST00000540428 MAGEB6P1A0A0J9YX57 407 aa14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 POLR3DP05423 398 aaPredicted RBP14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 HOXC6P09630 235 aa14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 MS4A1P11836 297 aa14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 COL6A1P12109 1028 aa14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 PLCD1P51178 756 aa14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 GABPAQ06546 454 aa14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 CCL14Q16627 93 aa14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 LHX8Q68G74 356 aa14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 GPR153Q6NV75 609 aa14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 ACER1Q8TDN7 264 aa14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 EDC3Q96F86 508 aaKnown RBP14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 CRNKL1Q9BZJ0 848 aaKnown RBP14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 PFASO15067 1338 aa14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 MYO5AQ9Y4I1 1855 aaKnown RBP14.57□□□□□ -0.08
CBX3P4-202ENST00000540428 SZT2Q5T011 3432 aa14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 SLC15A5A6NIM6 579 aa14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 SOX1O00570 391 aaPredicted RBP14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 PTPREP23469 700 aa14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 CCND3P30281 292 aaPredicted RBP14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 GUCY1A2P33402 732 aa14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 SLC9C2Q5TAH2 1124 aa14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 MFSD14CQ5VZR4 134 aa14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 CLASRPQ8N2M8 674 aaKnown RBP14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 KIF1BPQ96EK5 621 aa14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 IL1RAPL2Q9NP60 686 aa14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 ZMYND8Q9ULU4 1186 aaPredicted RBP14.56□□□□□ -0.08
CBX3P4-202ENST00000540428 SPDYE16A6NNV3 312 aaPredicted RBP14.55□□□□□ -0.08
CBX3P4-202ENST00000540428 PDE6AP16499 860 aa14.55□□□□□ -0.08
CBX3P4-202ENST00000540428 GRB14Q14449 540 aa14.55□□□□□ -0.08
CBX3P4-202ENST00000540428 RPAP2Q8IXW5 612 aaPredicted RBP14.55□□□□□ -0.08
CBX3P4-202ENST00000540428 PANK1Q8TE04 598 aa14.55□□□□□ -0.08
CBX3P4-202ENST00000540428 RPAP3Q9H6T3 665 aaPredicted RBP14.55□□□□□ -0.08
CBX3P4-202ENST00000540428 MCM9Q9NXL9 1143 aa14.55□□□□□ -0.08
CBX3P4-202ENST00000540428 BTBD7Q9P203 1132 aa14.55□□□□□ -0.08
CBX3P4-202ENST00000540428 IVNS1ABPQ9Y6Y0 642 aa14.55□□□□□ -0.08
CBX3P4-202ENST00000540428 ZBED9Q6R2W3 1325 aa14.55□□□□□ -0.08
CBX3P4-202ENST00000540428 DDX60LQ5H9U9 1706 aaKnown RBP14.55□□□□□ -0.08
CBX3P4-202ENST00000540428 MYH1P12882 1939 aa14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 ALPK3Q96L96 1907 aa14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 MSCO60682 206 aa14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 HMMRO75330 724 aa14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 MAGEA10P43363 369 aaPredicted RBP14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 SEPT2Q15019 361 aa14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 LRIT3Q3SXY7 679 aa14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 LRCH3Q96II8 777 aa14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 DCP1AQ9NPI6 582 aaPredicted RBP14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 HOXC10Q9NYD6 342 aa14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 SWAP70Q9UH65 585 aa14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 ZNF532Q9HCE3 1301 aa14.54□□□□□ -0.08
CBX3P4-202ENST00000540428 TCRBV5S4A2TA0A5A2 114 aa14.53□□□□□ -0.08
CBX3P4-202ENST00000540428 IFIT2P09913 472 aaKnown RBP14.53□□□□□ -0.08
CBX3P4-202ENST00000540428 SYN1P17600 705 aa14.53□□□□□ -0.08
CBX3P4-202ENST00000540428 ATP2B2Q01814 1243 aa14.53□□□□□ -0.08
CBX3P4-202ENST00000540428 COG2Q14746 738 aa14.53□□□□□ -0.08
CBX3P4-202ENST00000540428 WDR78Q5VTH9 848 aa14.53□□□□□ -0.08
CBX3P4-202ENST00000540428 TMEM179Q6ZVK1 233 aa14.53□□□□□ -0.08
CBX3P4-202ENST00000540428 TDHQ8IZJ6 230 aa14.53□□□□□ -0.08
CBX3P4-202ENST00000540428 FLRT1Q9NZU1 646 aa14.53□□□□□ -0.08
CBX3P4-202ENST00000540428 A0A1W2PRG0 241 aa14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 GOLIM4O00461 696 aa14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 STRNO43815 780 aa14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 RAB11FIP3O75154 756 aa14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 IGHA2P01877 340 aa14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 LCORLQ8N3X6 602 aa14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 SHCBP1Q8NEM2 672 aa14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 LPAR1Q92633 364 aa14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 DNAJC2Q99543 621 aaKnown RBP14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 ATP8A2Q9NTI2 1148 aa14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 DDX20Q9UHI6 824 aaKnown RBP14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 DDX19BQ9UMR2 479 aa14.52□□□□□ -0.09
CBX3P4-202ENST00000540428 MPHOSPH10O00566 681 aaKnown RBP14.51□□□□□ -0.09
CBX3P4-202ENST00000540428 LRRC26Q2I0M4 334 aa14.51□□□□□ -0.09
CBX3P4-202ENST00000540428 MIER1Q8N108 512 aa14.51□□□□□ -0.09
CBX3P4-202ENST00000540428 MB21D1Q8N884 522 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms