RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 RBBP6Q7Z6E9 1792 aaKnown RBP13.87□□□□□ -0.19
RTN3-209ENST00000538995 GRK4P32298 578 aa13.87□□□□□ -0.19
RTN3-209ENST00000538995 HERVK_113P62684 666 aa13.87□□□□□ -0.19
RTN3-209ENST00000538995 EVX2Q03828 476 aa13.87□□□□□ -0.19
RTN3-209ENST00000538995 IRF5Q13568 498 aa13.87□□□□□ -0.19
RTN3-209ENST00000538995 SBK1Q52WX2 424 aa13.87□□□□□ -0.19
RTN3-209ENST00000538995 SLC44A5Q8NCS7 719 aa13.87□□□□□ -0.19
RTN3-209ENST00000538995 SLAIN1Q8ND83 568 aa13.87□□□□□ -0.19
RTN3-209ENST00000538995 COA7Q96BR5 231 aa13.87□□□□□ -0.19
RTN3-209ENST00000538995 TMEM106CQ9BVX2 250 aa13.87□□□□□ -0.19
RTN3-209ENST00000538995 RWDD1Q9H446 243 aaPredicted RBP13.87□□□□□ -0.19
RTN3-209ENST00000538995 STAP2Q9UGK3 403 aa13.87□□□□□ -0.19
RTN3-209ENST00000538995 ROBO3Q96MS0 1386 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 POTEFA5A3E0 1075 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 GSG1L2A8MUP6 293 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 USP17L15C9J2P7 530 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 USP17L13C9JLJ4 530 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 USP17L11C9JVI0 530 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 USP17L18D6R9N7 530 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 USP17L22D6RA61 530 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 USP17L17D6RBQ6 530 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 USP17L19D6RCP7 530 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 USP17L20D6RJB6 530 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 MPHOSPH10O00566 681 aaKnown RBP13.86□□□□□ -0.19
RTN3-209ENST00000538995 GPAA1O43292 621 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 VCAM1P19320 739 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 CDK8P49336 464 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 USP17L24Q0WX57 530 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 SEPT2Q15019 361 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 CTR9Q6PD62 1173 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 TICAM2Q86XR7 235 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 SMC5Q8IY18 1101 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 ACER1Q8TDN7 264 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 PXYLP1Q8TE99 480 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 SH3TC2Q8TF17 1288 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 DYNLL2Q96FJ2 89 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 P2RX7Q99572 595 aaKnown RBP13.86□□□□□ -0.19
RTN3-209ENST00000538995 FSD1Q9BTV5 496 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 SH2D4AQ9H788 454 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 KIAA0100Q14667 2235 aaKnown RBP13.86□□□□□ -0.19
RTN3-209ENST00000538995 BRCA2P51587 3418 aa13.86□□□□□ -0.19
RTN3-209ENST00000538995 ECM2O94769 699 aaPredicted RBP13.85□□□□□ -0.19
RTN3-209ENST00000538995 FLT3LGP49771 235 aa13.85□□□□□ -0.19
RTN3-209ENST00000538995 LBX2Q6XYB7 198 aa13.85□□□□□ -0.19
RTN3-209ENST00000538995 GPRC5AQ8NFJ5 357 aa13.85□□□□□ -0.19
RTN3-209ENST00000538995 TNRC18O15417 2968 aaPredicted RBP13.85□□□□□ -0.19
RTN3-209ENST00000538995 PDE4DIPQ5VU43 2346 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 CYP2D7A0A087X1C5 515 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 M0R2C6 588 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 AKR1B1P15121 316 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 PDE1AP54750 535 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 UBXN2AP68543 259 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 ICA1Q05084 483 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 ZYXQ15942 572 aaKnown RBP13.84□□□□□ -0.19
RTN3-209ENST00000538995 ZMYM1Q5SVZ6 1142 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 CATSPERGQ6ZRH7 1159 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 LPAR1Q92633 364 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 EVI5LQ96CN4 794 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 ARHGEF10LQ9HCE6 1279 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 GABRQQ9UN88 632 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 RABGAP1Q9Y3P9 1069 aa13.84□□□□□ -0.19
RTN3-209ENST00000538995 MGAMO43451 1857 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 A0A1W2PRG0 241 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 ADCY3O60266 1144 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 MAPK4P31152 587 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 TDO2P48775 406 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 ERVK-9P63128 1117 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 ERVK-24P63145 666 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 EXOC6Q8TAG9 804 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 SOCS4Q8WXH5 440 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 NACAP1Q9BZK3 213 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 RPAP3Q9H6T3 665 aaPredicted RBP13.83□□□□□ -0.2
RTN3-209ENST00000538995 KANSL2Q9H9L4 492 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 ZNF287Q9HBT7 754 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 EPB41L4AQ9HCS5 686 aaPredicted RBP13.83□□□□□ -0.2
RTN3-209ENST00000538995 TXNRD2Q9NNW7 524 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 RBPJLQ9UBG7 517 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 TMX2Q9Y320 296 aa13.83□□□□□ -0.2
RTN3-209ENST00000538995 BAZ2AQ9UIF9 1905 aaKnown RBP13.82□□□□□ -0.2
RTN3-209ENST00000538995 PATL2C9JE40 543 aaKnown RBP13.82□□□□□ -0.2
RTN3-209ENST00000538995 CCNA1P78396 465 aa13.82□□□□□ -0.2
RTN3-209ENST00000538995 NKX2-3Q8TAU0 364 aa13.82□□□□□ -0.2
RTN3-209ENST00000538995 BIN2Q9UBW5 565 aaPredicted RBP13.82□□□□□ -0.2
RTN3-209ENST00000538995 SPDYE16A6NNV3 312 aaPredicted RBP13.81□□□□□ -0.2
RTN3-209ENST00000538995 SMIM22K7EJ46 135 aa13.81□□□□□ -0.2
RTN3-209ENST00000538995 APPP05067 770 aa13.81□□□□□ -0.2
RTN3-209ENST00000538995 CAPN2P17655 700 aa13.81□□□□□ -0.2
RTN3-209ENST00000538995 EN2P19622 333 aaPredicted RBP13.81□□□□□ -0.2
RTN3-209ENST00000538995 NUCB1Q02818 461 aa13.81□□□□□ -0.2
RTN3-209ENST00000538995 CHD1LQ86WJ1 897 aa13.81□□□□□ -0.2
RTN3-209ENST00000538995 SIAH1Q8IUQ4 282 aa13.81□□□□□ -0.2
RTN3-209ENST00000538995 IFNL3Q8IZI9 196 aa13.81□□□□□ -0.2
RTN3-209ENST00000538995 PAGR1Q9BTK6 254 aa13.81□□□□□ -0.2
RTN3-209ENST00000538995 LNPKQ9C0E8 428 aa13.81□□□□□ -0.2
RTN3-209ENST00000538995 VCPKMTQ9H867 229 aa13.81□□□□□ -0.2
RTN3-209ENST00000538995 GJD2Q9UKL4 321 aa13.81□□□□□ -0.2
RTN3-209ENST00000538995 SUPT16HQ9Y5B9 1047 aaKnown RBP13.81□□□□□ -0.2
RTN3-209ENST00000538995 MKI67P46013 3256 aaKnown RBP13.81□□□□□ -0.2
RTN3-209ENST00000538995 MINDY4BA8MYZ0 360 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 WDR46O15213 610 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms