RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 ATL2Q8NHH9 583 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 ENOX1Q8TC92 643 aaKnown RBP13.91□□□□□ -0.18
USP3-203ENST00000538686 RBM41Q96IZ5 413 aaKnown RBP13.91□□□□□ -0.18
USP3-203ENST00000538686 OSBPL7Q9BZF2 842 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 PRDM16Q9HAZ2 1276 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 SENP2Q9HC62 589 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 WWC3Q9ULE0 1092 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 JCADQ9P266 1359 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 A0A1B0GTH6 734 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 RASSF10A6NK89 507 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 DNM1LO00429 736 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 SMIM24O75264 130 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 LINGO3P0C6S8 592 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 GNAT1P11488 350 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 DBN1Q16643 649 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 RRP12Q5JTH9 1297 aaKnown RBP13.91□□□□□ -0.18
USP3-203ENST00000538686 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.91□□□□□ -0.18
USP3-203ENST00000538686 ZNF232Q9UNY5 417 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 SH3TC1Q8TE82 1336 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 MROH2AA6NES4 1674 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 E7EVH7 732 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 MFAP3LO75121 409 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 SURF6O75683 361 aaKnown RBP13.9□□□□□ -0.18
USP3-203ENST00000538686 PFKFB1P16118 471 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 ATP4AP20648 1035 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 SYKP43405 635 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 POLA2Q14181 598 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 CACNA2D3Q8IZS8 1091 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 NSUN7Q8NE18 718 aaKnown RBP13.9□□□□□ -0.18
USP3-203ENST00000538686 DDX54Q8TDD1 881 aaKnown RBP13.9□□□□□ -0.18
USP3-203ENST00000538686 PIK3R5Q8WYR1 880 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 TBC1D5Q92609 795 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 ARL8AQ96BM9 186 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 SIL1Q9H173 461 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 SLC5A4Q9NY91 659 aa13.9□□□□□ -0.18
USP3-203ENST00000538686 GOLGA6L10A0A0M3HER8 536 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 LRRD1A4D1F6 860 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 C5orf60A6NFR6 353 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 NPTXRO95502 500 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 VIMP08670 466 aaKnown RBP13.89□□□□□ -0.19
USP3-203ENST00000538686 KIF5BP33176 963 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 ATP1A2P50993 1020 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 SEPT2Q15019 361 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 HDGFL2Q7Z4V5 671 aaPredicted RBP13.89□□□□□ -0.19
USP3-203ENST00000538686 MMGT1Q8N4V1 131 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 CCDC97Q96F63 343 aaPredicted RBP13.89□□□□□ -0.19
USP3-203ENST00000538686 L3MBTL3Q96JM7 780 aaPredicted RBP13.89□□□□□ -0.19
USP3-203ENST00000538686 GDAP1L1Q96MZ0 367 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 MMS19Q96T76 1030 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 HAUS4Q9H6D7 363 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 ANKIB1Q9P2G1 1089 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 ITIH6Q6UXX5 1313 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 GMNCA6NCL1 334 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 UBTFL1P0CB47 393 aaPredicted RBP13.89□□□□□ -0.19
USP3-203ENST00000538686 CCND1P24385 295 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 TPP2P29144 1249 aaPredicted RBP13.89□□□□□ -0.19
USP3-203ENST00000538686 CCNG1P51959 295 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 CYP26C1Q6V0L0 522 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 TSHZ1Q6ZSZ6 1077 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 MYLK4Q86YV6 388 aaPredicted RBP13.89□□□□□ -0.19
USP3-203ENST00000538686 MLKLQ8NB16 471 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 CAGE1Q8TC20 777 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 HVCN1Q96D96 273 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 ZNF570Q96NI8 536 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 CTAGE1Q96RT6 745 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 ECHDC1Q9NTX5 307 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 PPLO60437 1756 aa13.89□□□□□ -0.19
USP3-203ENST00000538686 XRN1Q8IZH2 1706 aaKnown RBP13.88□□□□□ -0.19
USP3-203ENST00000538686 NEXMIFQ5QGS0 1516 aa13.88□□□□□ -0.19
USP3-203ENST00000538686 FAM237AA0A1B0GTK4 181 aa13.88□□□□□ -0.19
USP3-203ENST00000538686 ANO9A1A5B4 782 aa13.88□□□□□ -0.19
USP3-203ENST00000538686 PTPDC1A2A3K4 754 aa13.88□□□□□ -0.19
USP3-203ENST00000538686 F6X3S4 739 aa13.88□□□□□ -0.19
USP3-203ENST00000538686 ALDH1L1O75891 902 aa13.88□□□□□ -0.19
USP3-203ENST00000538686 IL13P35225 146 aa13.88□□□□□ -0.19
USP3-203ENST00000538686 CTCFP49711 727 aaPredicted RBP13.88□□□□□ -0.19
USP3-203ENST00000538686 GUCY1A3Q02108 690 aa13.88□□□□□ -0.19
USP3-203ENST00000538686 ZRSR2Q15696 482 aaKnown RBP13.88□□□□□ -0.19
USP3-203ENST00000538686 ACBD5Q5T8D3 534 aaPredicted RBP13.88□□□□□ -0.19
USP3-203ENST00000538686 ARMC3Q5W041 872 aa13.88□□□□□ -0.19
USP3-203ENST00000538686 ZNF662Q6ZS27 426 aa13.88□□□□□ -0.19
USP3-203ENST00000538686 NEK1Q96PY6 1258 aa13.88□□□□□ -0.19
USP3-203ENST00000538686 IQCGQ9H095 443 aaKnown RBP13.88□□□□□ -0.19
USP3-203ENST00000538686 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.88□□□□□ -0.19
USP3-203ENST00000538686 SETD1BQ9UPS6 1966 aaKnown RBP13.88□□□□□ -0.19
USP3-203ENST00000538686 KIF3BO15066 747 aa13.87□□□□□ -0.19
USP3-203ENST00000538686 TFRCP02786 760 aaKnown RBP13.87□□□□□ -0.19
USP3-203ENST00000538686 ALADP13716 330 aa13.87□□□□□ -0.19
USP3-203ENST00000538686 MRPS35P82673 323 aaKnown RBP13.87□□□□□ -0.19
USP3-203ENST00000538686 TRIM14Q14142 442 aa13.87□□□□□ -0.19
USP3-203ENST00000538686 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.87□□□□□ -0.19
USP3-203ENST00000538686 ILDR1Q86SU0 546 aaPredicted RBP13.87□□□□□ -0.19
USP3-203ENST00000538686 TRIM4Q9C037 500 aa13.87□□□□□ -0.19
USP3-203ENST00000538686 CABP2Q9NPB3 220 aa13.87□□□□□ -0.19
USP3-203ENST00000538686 NFE2L3Q9Y4A8 694 aa13.87□□□□□ -0.19
USP3-203ENST00000538686 ANKARQ7Z5J8 1434 aa13.87□□□□□ -0.19
USP3-203ENST00000538686 CAMSAP1Q5T5Y3 1602 aa13.87□□□□□ -0.19
USP3-203ENST00000538686 CREB3O43889 395 aa13.87□□□□□ -0.19
USP3-203ENST00000538686 ALDH3A1P30838 453 aa13.87□□□□□ -0.19
USP3-203ENST00000538686 LMNB2Q03252 620 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms