RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 TRIM73Q86UV7 250 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 LMBR1Q8WVP7 490 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 LZTFL1Q9NQ48 299 aa12.23□□□□□ -0.45
CLSTN3-207ENST00000537408 LRP6O75581 1613 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 C6orf229H3BNL8 230 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 PPFIA2O75334 1257 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 COG1Q8WTW3 980 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 CDC5LQ99459 802 aaKnown RBP12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 DTNBO60941 627 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 ALDH1B1P30837 517 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 IL6STP40189 918 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 BLOC1S2Q6QNY1 142 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 ANKRD13DQ6ZTN6 518 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 MAB21L3Q8N8X9 362 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 DRAXINQ8NBI3 349 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 CNNM1Q9NRU3 951 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 KIAA1468Q9P260 1216 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 A0A087WWV3 80 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 FANCGO15287 622 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 USPL1Q5W0Q7 1092 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 RPS6KL1Q9Y6S9 549 aa12.22□□□□□ -0.45
CLSTN3-207ENST00000537408 CD163L1Q9NR16 1453 aa12.21□□□□□ -0.45
CLSTN3-207ENST00000537408 PFKFB2O60825 505 aa12.21□□□□□ -0.45
CLSTN3-207ENST00000537408 CCDC57Q2TAC2 916 aa12.21□□□□□ -0.45
CLSTN3-207ENST00000537408 DPCR1Q3MIW9 517 aa12.21□□□□□ -0.45
CLSTN3-207ENST00000537408 SLC30A9Q6PML9 568 aa12.21□□□□□ -0.45
CLSTN3-207ENST00000537408 C2CD5Q86YS7 1000 aa12.21□□□□□ -0.45
CLSTN3-207ENST00000537408 RIPOR2Q9Y4F9 1068 aa12.21□□□□□ -0.45
CLSTN3-207ENST00000537408 PPP1R12BO60237 982 aaPredicted RBP12.21□□□□□ -0.45
CLSTN3-207ENST00000537408 SLC5A9Q2M3M2 681 aa12.21□□□□□ -0.45
CLSTN3-207ENST00000537408 CCDC13Q8IYE1 715 aa12.21□□□□□ -0.45
CLSTN3-207ENST00000537408 TPCN1Q9ULQ1 816 aa12.21□□□□□ -0.45
CLSTN3-207ENST00000537408 BIN1O00499 593 aa12.21□□□□□ -0.46
CLSTN3-207ENST00000537408 CDKL5O76039 1030 aa12.21□□□□□ -0.46
CLSTN3-207ENST00000537408 A1BGP04217 495 aa12.21□□□□□ -0.46
CLSTN3-207ENST00000537408 MYL5Q02045 173 aa12.21□□□□□ -0.46
CLSTN3-207ENST00000537408 DALRD3Q5D0E6 543 aaKnown RBP12.21□□□□□ -0.46
CLSTN3-207ENST00000537408 TOGARAM2Q6ZUX3 1019 aa12.21□□□□□ -0.46
CLSTN3-207ENST00000537408 RBM17Q96I25 401 aaKnown RBP12.21□□□□□ -0.46
CLSTN3-207ENST00000537408 SPAG5Q96R06 1193 aa12.21□□□□□ -0.46
CLSTN3-207ENST00000537408 SIL1Q9H173 461 aa12.21□□□□□ -0.46
CLSTN3-207ENST00000537408 ANKIB1Q9P2G1 1089 aa12.21□□□□□ -0.46
CLSTN3-207ENST00000537408 USP32Q8NFA0 1604 aa12.21□□□□□ -0.46
CLSTN3-207ENST00000537408 RESTQ13127 1097 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 RC3H1Q5TC82 1133 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 IQCEQ6IPM2 695 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 TRIM58Q8NG06 486 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 BRF1Q92994 677 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 PIM2Q9P1W9 311 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 ZNF202O95125 648 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 CYB5D1Q6P9G0 228 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 COPS6Q7L5N1 327 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 RCOR1Q9UKL0 485 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 COL16A1Q07092 1604 aaPredicted RBP12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 COL14A1Q05707 1796 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 RASSF9O75901 435 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 RAB27AP51159 221 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 STK3Q13188 491 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 KCNB1Q14721 858 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 MFN1Q8IWA4 741 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 MYD88Q99836 296 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 AHCYL1O43865 530 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 ZEB2O60315 1214 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 KIRREL3Q8IZU9 778 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 C3orf20Q8ND61 904 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 XAGE3Q8WTP9 111 aa12.2□□□□□ -0.46
CLSTN3-207ENST00000537408 PI4KAP2A4QPH2 592 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 SERPINB2P05120 415 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 CKAP4Q07065 602 aaKnown RBP12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 MTX1Q13505 466 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 PI4KAP1Q8N8J0 262 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 DESI2Q9BSY9 194 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 GOLPH3LQ9H4A5 285 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 CWC25Q9NXE8 425 aaPredicted RBP12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 LAMB3Q13751 1172 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 SPECC1Q5M775 1068 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 PPFIBP1Q86W92 1011 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 NOC3LQ8WTT2 800 aaKnown RBP12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 HSF2BPO75031 334 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 PDHBP11177 359 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 EIF6P56537 245 aaKnown RBP12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 GOLGA8FQ08AF8 430 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 GOLGA8DPQ0D2H9 430 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 IFT88Q13099 833 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 CCDC152Q4G0S7 254 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 CCDC38Q502W7 563 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 SUPT20HQ8NEM7 779 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 YIPF3Q9GZM5 350 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 CHPF2Q9P2E5 772 aa12.19□□□□□ -0.46
CLSTN3-207ENST00000537408 IFT172Q9UG01 1749 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 ANKRD23Q86SG2 305 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 CAGE1Q8TC20 777 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 RPGRIP1Q96KN7 1286 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 EYA3Q99504 573 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 NAA15Q9BXJ9 866 aaKnown RBP12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 TTF2Q9UNY4 1162 aaKnown RBP12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 ZBTB1Q9Y2K1 713 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 RANBP1P43487 201 aa12.18□□□□□ -0.46
CLSTN3-207ENST00000537408 GOPCQ9HD26 462 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms