RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 CTU1Q7Z7A3 348 aaKnown RBP14.08□□□□□ -0.16
CLIP1-208ENST00000537004 CERS3Q8IU89 383 aa14.08□□□□□ -0.16
CLIP1-208ENST00000537004 FOXP4Q8IVH2 680 aaPredicted RBP14.08□□□□□ -0.16
CLIP1-208ENST00000537004 CRNKL1Q9BZJ0 848 aaKnown RBP14.08□□□□□ -0.16
CLIP1-208ENST00000537004 MCM9Q9NXL9 1143 aa14.08□□□□□ -0.16
CLIP1-208ENST00000537004 TAF6LQ9Y6J9 622 aa14.08□□□□□ -0.16
CLIP1-208ENST00000537004 U3KPZ7 1027 aaPredicted RBP14.08□□□□□ -0.16
CLIP1-208ENST00000537004 PDHXO00330 501 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 CYP2D6P10635 497 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 UBE3CQ15386 1083 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 LRRFIP1Q32MZ4 808 aaKnown RBP14.07□□□□□ -0.16
CLIP1-208ENST00000537004 NOM1Q5C9Z4 860 aaKnown RBP14.07□□□□□ -0.16
CLIP1-208ENST00000537004 GPAT2Q6NUI2 795 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 CD99L2Q8TCZ2 262 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 TRIM34Q9BYJ4 488 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 DCP1AQ9NPI6 582 aaPredicted RBP14.07□□□□□ -0.16
CLIP1-208ENST00000537004 A0A0G2JLL6 359 aaPredicted RBP14.07□□□□□ -0.16
CLIP1-208ENST00000537004 CXCL11O14625 94 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 TRAK2O60296 914 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 BAG4O95429 457 aaKnown RBP14.07□□□□□ -0.16
CLIP1-208ENST00000537004 CYP2C8P10632 490 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 GADL1Q6ZQY3 521 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 PRRT2Q7Z6L0 340 aaPredicted RBP14.07□□□□□ -0.16
CLIP1-208ENST00000537004 LARP6Q9BRS8 491 aaKnown RBP14.07□□□□□ -0.16
CLIP1-208ENST00000537004 ZFYVE28Q9HCC9 887 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 SERPINB13Q9UIV8 391 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 ZDHHC9Q9Y397 364 aa14.07□□□□□ -0.16
CLIP1-208ENST00000537004 SIPA1L1O43166 1804 aa14.06□□□□□ -0.16
CLIP1-208ENST00000537004 CDK5RAP2Q96SN8 1893 aa14.06□□□□□ -0.16
CLIP1-208ENST00000537004 CYP2D7A0A087X1C5 515 aa14.06□□□□□ -0.16
CLIP1-208ENST00000537004 POLR3DP05423 398 aaPredicted RBP14.06□□□□□ -0.16
CLIP1-208ENST00000537004 BLOC1S2Q6QNY1 142 aa14.06□□□□□ -0.16
CLIP1-208ENST00000537004 OSBP2Q969R2 916 aa14.06□□□□□ -0.16
CLIP1-208ENST00000537004 CCDC85CA6NKD9 419 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 TLR2O60603 784 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 ZFYP08048 801 aaPredicted RBP14.05□□□□□ -0.16
CLIP1-208ENST00000537004 SP3Q02447 781 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 KRT32Q14532 448 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 ANKRD23Q86SG2 305 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 DSCC1Q9BVC3 393 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 CPA4Q9UI42 421 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 USP17L5A8MUK1 530 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 GOLGA6L22H0YM25 854 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 GH2P01242 217 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 PTMSP20962 102 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 HMGCS2P54868 508 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 COL9A3Q14050 684 aaPredicted RBP14.05□□□□□ -0.16
CLIP1-208ENST00000537004 TREML2Q5T2D2 321 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 TTC6Q86TZ1 520 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 SLC44A5Q8NCS7 719 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 ZNF280CQ8ND82 737 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 DYNLL2Q96FJ2 89 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 ZSCAN31Q96LW9 406 aaPredicted RBP14.05□□□□□ -0.16
CLIP1-208ENST00000537004 ARHGAP39Q9C0H5 1083 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 TRIM17Q9Y577 477 aa14.05□□□□□ -0.16
CLIP1-208ENST00000537004 LAMB1P07942 1786 aa14.04□□□□□ -0.16
CLIP1-208ENST00000537004 M0R2C6 588 aa14.04□□□□□ -0.16
CLIP1-208ENST00000537004 LARGE1O95461 756 aa14.04□□□□□ -0.16
CLIP1-208ENST00000537004 CYP21A2P08686 494 aa14.04□□□□□ -0.16
CLIP1-208ENST00000537004 RPS6KB1P23443 525 aa14.04□□□□□ -0.16
CLIP1-208ENST00000537004 SHMT1P34896 483 aa14.04□□□□□ -0.16
CLIP1-208ENST00000537004 ZSCAN25Q6NSZ9 544 aa14.04□□□□□ -0.16
CLIP1-208ENST00000537004 TATDN1Q6P1N9 297 aa14.04□□□□□ -0.16
CLIP1-208ENST00000537004 SH2B1Q9NRF2 756 aaPredicted RBP14.04□□□□□ -0.16
CLIP1-208ENST00000537004 ZBTB21Q9ULJ3 1066 aa14.04□□□□□ -0.16
CLIP1-208ENST00000537004 SLC4A4Q9Y6R1 1079 aa14.04□□□□□ -0.16
CLIP1-208ENST00000537004 ASNSP08243 561 aa14.03□□□□□ -0.16
CLIP1-208ENST00000537004 HSPD1P10809 573 aaKnown RBP14.03□□□□□ -0.16
CLIP1-208ENST00000537004 GABPAQ06546 454 aa14.03□□□□□ -0.16
CLIP1-208ENST00000537004 MTMR2Q13614 643 aa14.03□□□□□ -0.16
CLIP1-208ENST00000537004 OTOP1Q7RTM1 612 aa14.03□□□□□ -0.16
CLIP1-208ENST00000537004 STRBPQ96SI9 672 aaKnown RBP14.03□□□□□ -0.16
CLIP1-208ENST00000537004 EHD4Q9H223 541 aa14.03□□□□□ -0.16
CLIP1-208ENST00000537004 ALDH8A1Q9H2A2 487 aaPredicted RBP14.03□□□□□ -0.16
CLIP1-208ENST00000537004 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.03□□□□□ -0.16
CLIP1-208ENST00000537004 FOCADQ5VW36 1801 aa14.03□□□□□ -0.16
CLIP1-208ENST00000537004 BRD1O95696 1058 aa14.03□□□□□ -0.16
CLIP1-208ENST00000537004 FASTKD5Q7L8L6 764 aaKnown RBP14.03□□□□□ -0.16
CLIP1-208ENST00000537004 ZCCHC17Q9NP64 241 aaKnown RBP14.03□□□□□ -0.16
CLIP1-208ENST00000537004 USP17L12C9JPN9 530 aa14.02□□□□□ -0.16
CLIP1-208ENST00000537004 USP17L21D6R901 530 aa14.02□□□□□ -0.16
CLIP1-208ENST00000537004 DOCK1Q14185 1865 aa14.02□□□□□ -0.16
CLIP1-208ENST00000537004 ANKRD1Q15327 319 aa14.02□□□□□ -0.16
CLIP1-208ENST00000537004 CERKLQ49MI3 558 aaPredicted RBP14.02□□□□□ -0.16
CLIP1-208ENST00000537004 C17orf99Q6UX52 265 aa14.02□□□□□ -0.16
CLIP1-208ENST00000537004 APPBP2Q92624 585 aa14.02□□□□□ -0.16
CLIP1-208ENST00000537004 TCEANC2Q96MN5 208 aa14.02□□□□□ -0.16
CLIP1-208ENST00000537004 NEK1Q96PY6 1258 aa14.02□□□□□ -0.16
CLIP1-208ENST00000537004 ATP8A2Q9NTI2 1148 aa14.02□□□□□ -0.16
CLIP1-208ENST00000537004 CTGFP29279 349 aa14.02□□□□□ -0.17
CLIP1-208ENST00000537004 ME3Q16798 604 aa14.02□□□□□ -0.17
CLIP1-208ENST00000537004 SKOR2Q2VWA4 1001 aaPredicted RBP14.02□□□□□ -0.17
CLIP1-208ENST00000537004 MCTP1Q6DN14 999 aa14.02□□□□□ -0.17
CLIP1-208ENST00000537004 ERO1AQ96HE7 468 aa14.02□□□□□ -0.17
CLIP1-208ENST00000537004 EFCC1Q9HA90 598 aa14.02□□□□□ -0.17
CLIP1-208ENST00000537004 TPCN1Q9ULQ1 816 aa14.02□□□□□ -0.17
CLIP1-208ENST00000537004 HPS5Q9UPZ3 1129 aa14.02□□□□□ -0.17
CLIP1-208ENST00000537004 GSG1L2A8MUP6 293 aa14.01□□□□□ -0.17
CLIP1-208ENST00000537004 GPAA1O43292 621 aa14.01□□□□□ -0.17
CLIP1-208ENST00000537004 BACE1P56817 501 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms