RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 TAF6LQ9Y6J9 622 aa14.3□□□□□ -0.12
CHD4-203ENST00000535717 GREB1LQ9C091 1923 aaPredicted RBP14.29□□□□□ -0.12
CHD4-203ENST00000535717 IGKV6D-41A0A0C4DH26 115 aa14.29□□□□□ -0.12
CHD4-203ENST00000535717 RANBP6O60518 1105 aaKnown RBP14.29□□□□□ -0.12
CHD4-203ENST00000535717 PCP11498 1178 aaKnown RBP14.29□□□□□ -0.12
CHD4-203ENST00000535717 TFAP4Q01664 338 aa14.29□□□□□ -0.12
CHD4-203ENST00000535717 MTMR2Q13614 643 aa14.29□□□□□ -0.12
CHD4-203ENST00000535717 RRP12Q5JTH9 1297 aaKnown RBP14.29□□□□□ -0.12
CHD4-203ENST00000535717 NEDD1Q8NHV4 660 aa14.29□□□□□ -0.12
CHD4-203ENST00000535717 RNF41Q9H4P4 317 aaPredicted RBP14.29□□□□□ -0.12
CHD4-203ENST00000535717 TOMM22Q9NS69 142 aa14.29□□□□□ -0.12
CHD4-203ENST00000535717 NEDD4P46934 1319 aa14.29□□□□□ -0.12
CHD4-203ENST00000535717 PTPRFP10586 1907 aa14.29□□□□□ -0.12
CHD4-203ENST00000535717 A0A1W2PRG0 241 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 USP17L10C9JJH3 530 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 IGF2BP3O00425 579 aaKnown RBP eCLIP14.28□□□□□ -0.12
CHD4-203ENST00000535717 TSPY3P0CV98 308 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 TSPY8P0CW00 308 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 HMGCS2P54868 508 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 BACE1P56817 501 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 MAP2K1Q02750 393 aaPredicted RBP14.28□□□□□ -0.12
CHD4-203ENST00000535717 ICA1Q05084 483 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 DGKZQ13574 1117 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 NECTIN1Q15223 517 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 IFNL1Q8IU54 200 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 PLIN4Q96Q06 1357 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 KANSL2Q9H9L4 492 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 WBP1LQ9NX94 342 aa14.28□□□□□ -0.12
CHD4-203ENST00000535717 TSPY2A6NKD2 308 aa14.27□□□□□ -0.13
CHD4-203ENST00000535717 BTBD19C9JJ37 291 aa14.27□□□□□ -0.13
CHD4-203ENST00000535717 SLC27A2O14975 620 aa14.27□□□□□ -0.13
CHD4-203ENST00000535717 EEF2P13639 858 aaKnown RBP14.27□□□□□ -0.13
CHD4-203ENST00000535717 SH3D19Q5HYK7 790 aa14.27□□□□□ -0.13
CHD4-203ENST00000535717 CREB3L3Q68CJ9 461 aa14.27□□□□□ -0.13
CHD4-203ENST00000535717 GPAT2Q6NUI2 795 aa14.27□□□□□ -0.13
CHD4-203ENST00000535717 GADL1Q6ZQY3 521 aa14.27□□□□□ -0.13
CHD4-203ENST00000535717 FASTKD5Q7L8L6 764 aaKnown RBP14.27□□□□□ -0.13
CHD4-203ENST00000535717 CEP95Q96GE4 821 aa14.27□□□□□ -0.13
CHD4-203ENST00000535717 FEZ1Q99689 392 aa14.27□□□□□ -0.13
CHD4-203ENST00000535717 KIAA1683Q9H0B3 1180 aa14.27□□□□□ -0.13
CHD4-203ENST00000535717 IL17RBQ9NRM6 502 aa14.27□□□□□ -0.13
CHD4-203ENST00000535717 B4E1Z4 1266 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 C19orf81C9J6K1 198 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 E7EWF7 191 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 NMT2O60551 498 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 REC8O95072 547 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 ATP2B2Q01814 1243 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 ZYXQ15942 572 aaKnown RBP14.26□□□□□ -0.13
CHD4-203ENST00000535717 USP17L2Q6R6M4 530 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 STOX1Q6ZVD7 989 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 FAM43AQ8N2R8 423 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 ESR2Q92731 530 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 ARHGEF10LQ9HCE6 1279 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 EMILIN3Q9NT22 766 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 RNF186Q9NXI6 227 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 MTMR4Q9NYA4 1195 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 NYAP2Q9P242 653 aa14.26□□□□□ -0.13
CHD4-203ENST00000535717 LOC285556D6RIA3 1793 aa14.25□□□□□ -0.13
CHD4-203ENST00000535717 KDM4AO75164 1064 aa14.25□□□□□ -0.13
CHD4-203ENST00000535717 TREML2Q5T2D2 321 aa14.25□□□□□ -0.13
CHD4-203ENST00000535717 ANKRD23Q86SG2 305 aa14.25□□□□□ -0.13
CHD4-203ENST00000535717 PROCA1Q8NCQ7 364 aaPredicted RBP14.25□□□□□ -0.13
CHD4-203ENST00000535717 KRT23Q9C075 422 aa14.25□□□□□ -0.13
CHD4-203ENST00000535717 CNNM2Q9H8M5 875 aa14.25□□□□□ -0.13
CHD4-203ENST00000535717 ZSWIM5Q9P217 1185 aa14.25□□□□□ -0.13
CHD4-203ENST00000535717 CLIP2Q9UDT6 1046 aa14.25□□□□□ -0.13
CHD4-203ENST00000535717 TMX2Q9Y320 296 aa14.25□□□□□ -0.13
CHD4-203ENST00000535717 PDHXO00330 501 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 TRPA1O75762 1119 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 TTLL1O95922 423 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 NT5C2P49902 561 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 USP14P54578 494 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 KIAA1755Q5JYT7 1200 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 OTUD7BQ6GQQ9 843 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 RASEFQ8IZ41 740 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 C12orf42Q96LP6 360 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 BEGAINQ9BUH8 593 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 SH2D4AQ9H788 454 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 TCP11L1Q9NUJ3 509 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 TMOD4Q9NZQ9 345 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 AGTPBP1Q9UPW5 1226 aa14.24□□□□□ -0.13
CHD4-203ENST00000535717 ALDH1A1P00352 501 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 HSPA1AP0DMV8 641 aaKnown RBP14.23□□□□□ -0.13
CHD4-203ENST00000535717 HSPA1BP0DMV9 641 aaKnown RBP14.23□□□□□ -0.13
CHD4-203ENST00000535717 HSPA4P34932 840 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 NOVP48745 357 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 TRDNQ13061 729 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 C8orf34Q49A92 452 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 RNF20Q5VTR2 975 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 CYB5R4Q7L1T6 521 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 MKL1Q969V6 931 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 ZKSCAN3Q9BRR0 538 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 USP26Q9BXU7 913 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 VCPKMTQ9H867 229 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 ZCCHC17Q9NP64 241 aaKnown RBP14.23□□□□□ -0.13
CHD4-203ENST00000535717 SAGE1Q9NXZ1 904 aa14.23□□□□□ -0.13
CHD4-203ENST00000535717 EPB41L2O43491 1005 aaKnown RBP14.22□□□□□ -0.13
CHD4-203ENST00000535717 CA12O43570 354 aa14.22□□□□□ -0.13
CHD4-203ENST00000535717 SEC24BO95487 1268 aa14.22□□□□□ -0.13
CHD4-203ENST00000535717 TBC1D8O95759 1140 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms