RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 TMEM179Q6ZVK1 233 aa15.99■□□□□ 0.15
VPS28-211ENST00000530790 ACER1Q8TDN7 264 aa15.99■□□□□ 0.15
VPS28-211ENST00000530790 OTUD7AQ8TE49 926 aaPredicted RBP15.99■□□□□ 0.15
VPS28-211ENST00000530790 GCC1Q96CN9 775 aa15.99■□□□□ 0.15
VPS28-211ENST00000530790 P2RX7Q99572 595 aaKnown RBP15.99■□□□□ 0.15
VPS28-211ENST00000530790 ARPP21Q9UBL0 812 aaPredicted RBP15.99■□□□□ 0.15
VPS28-211ENST00000530790 BRCA2P51587 3418 aa15.99■□□□□ 0.15
VPS28-211ENST00000530790 CYP2D7A0A087X1C5 515 aa15.98■□□□□ 0.15
VPS28-211ENST00000530790 USP17L12C9JPN9 530 aa15.98■□□□□ 0.15
VPS28-211ENST00000530790 USP17L21D6R901 530 aa15.98■□□□□ 0.15
VPS28-211ENST00000530790 RNF113AO15541 343 aaKnown RBP15.98■□□□□ 0.15
VPS28-211ENST00000530790 VCAM1P19320 739 aa15.98■□□□□ 0.15
VPS28-211ENST00000530790 EN2P19622 333 aaPredicted RBP15.98■□□□□ 0.15
VPS28-211ENST00000530790 GUCY1A2P33402 732 aa15.98■□□□□ 0.15
VPS28-211ENST00000530790 HDAC1Q13547 482 aaPredicted RBP15.98■□□□□ 0.15
VPS28-211ENST00000530790 IRF5Q13568 498 aa15.98■□□□□ 0.15
VPS28-211ENST00000530790 PI4K2BQ8TCG2 481 aa15.98■□□□□ 0.15
VPS28-211ENST00000530790 USP17L15C9J2P7 530 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 USP17L13C9JLJ4 530 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 USP17L11C9JVI0 530 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 USP17L18D6R9N7 530 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 USP17L22D6RA61 530 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 USP17L17D6RBQ6 530 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 USP17L19D6RCP7 530 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 USP17L20D6RJB6 530 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 ADCY3O60266 1144 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 USP17L24Q0WX57 530 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 ANKRD45Q5TZF3 282 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 CTR9Q6PD62 1173 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 C16orf86Q6ZW13 317 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 GPRC5AQ8NFJ5 357 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 OSBP2Q969R2 916 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 STRBPQ96SI9 672 aaKnown RBP15.97■□□□□ 0.15
VPS28-211ENST00000530790 FSD1Q9BTV5 496 aa15.97■□□□□ 0.15
VPS28-211ENST00000530790 BAZ2AQ9UIF9 1905 aaKnown RBP15.97■□□□□ 0.15
VPS28-211ENST00000530790 GPAA1O43292 621 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 AKR1B1P15121 316 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 ELNP15502 786 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 GNAT2P19087 354 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 CDK8P49336 464 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 ICA1Q05084 483 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 MTFR1Q15390 333 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 CCAR1Q8IX12 1150 aaKnown RBP15.96■□□□□ 0.15
VPS28-211ENST00000530790 PXYLP1Q8TE99 480 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 CCDC17Q96LX7 622 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 PAGR1Q9BTK6 254 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 RPAP3Q9H6T3 665 aaPredicted RBP15.96■□□□□ 0.15
VPS28-211ENST00000530790 SH2D4AQ9H788 454 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 TXNRD2Q9NNW7 524 aa15.96■□□□□ 0.15
VPS28-211ENST00000530790 MYH8P13535 1937 aa15.96■□□□□ 0.14
VPS28-211ENST00000530790 SALL3Q9BXA9 1300 aa15.95■□□□□ 0.14
VPS28-211ENST00000530790 M0R2C6 588 aa15.95■□□□□ 0.14
VPS28-211ENST00000530790 INHAP05111 366 aa15.95■□□□□ 0.14
VPS28-211ENST00000530790 CCL5P13501 91 aa15.95■□□□□ 0.14
VPS28-211ENST00000530790 ERVK-9P63128 1117 aa15.95■□□□□ 0.14
VPS28-211ENST00000530790 ERVK-24P63145 666 aa15.95■□□□□ 0.14
VPS28-211ENST00000530790 GIMAP6Q6P9H5 292 aa15.95■□□□□ 0.14
VPS28-211ENST00000530790 NKX2-3Q8TAU0 364 aa15.95■□□□□ 0.14
VPS28-211ENST00000530790 SOCS4Q8WXH5 440 aa15.95■□□□□ 0.14
VPS28-211ENST00000530790 RNF208Q9H0X6 261 aa15.95■□□□□ 0.14
VPS28-211ENST00000530790 ARHGEF10LQ9HCE6 1279 aa15.95■□□□□ 0.14
VPS28-211ENST00000530790 A0A1W2PRG0 241 aa15.94■□□□□ 0.14
VPS28-211ENST00000530790 GSG1L2A8MUP6 293 aa15.94■□□□□ 0.14
VPS28-211ENST00000530790 SMIM22K7EJ46 135 aa15.94■□□□□ 0.14
VPS28-211ENST00000530790 MAPK4P31152 587 aa15.94■□□□□ 0.14
VPS28-211ENST00000530790 TDO2P48775 406 aa15.94■□□□□ 0.14
VPS28-211ENST00000530790 SBK1Q52WX2 424 aa15.94■□□□□ 0.14
VPS28-211ENST00000530790 PRPF38BQ5VTL8 546 aaKnown RBP15.94■□□□□ 0.14
VPS28-211ENST00000530790 CATSPERGQ6ZRH7 1159 aa15.94■□□□□ 0.14
VPS28-211ENST00000530790 CLEC10AQ8IUN9 316 aa15.94■□□□□ 0.14
VPS28-211ENST00000530790 CWC22Q9HCG8 908 aaKnown RBP15.94■□□□□ 0.14
VPS28-211ENST00000530790 RBPJLQ9UBG7 517 aa15.94■□□□□ 0.14
VPS28-211ENST00000530790 RABGAP1Q9Y3P9 1069 aa15.94■□□□□ 0.14
VPS28-211ENST00000530790 ROBO3Q96MS0 1386 aa15.94■□□□□ 0.14
VPS28-211ENST00000530790 MKI67P46013 3256 aaKnown RBP15.93■□□□□ 0.14
VPS28-211ENST00000530790 KIAA0100Q14667 2235 aaKnown RBP15.93■□□□□ 0.14
VPS28-211ENST00000530790 PEX10O60683 326 aa15.93■□□□□ 0.14
VPS28-211ENST00000530790 APPP05067 770 aa15.93■□□□□ 0.14
VPS28-211ENST00000530790 CCNA1P78396 465 aa15.93■□□□□ 0.14
VPS28-211ENST00000530790 LPAR1Q92633 364 aa15.93■□□□□ 0.14
VPS28-211ENST00000530790 TANGO6Q9C0B7 1094 aa15.93■□□□□ 0.14
VPS28-211ENST00000530790 EPB41L4AQ9HCS5 686 aaPredicted RBP15.93■□□□□ 0.14
VPS28-211ENST00000530790 SPDYE16A6NNV3 312 aaPredicted RBP15.92■□□□□ 0.14
VPS28-211ENST00000530790 MINDY4BA8MYZ0 360 aa15.92■□□□□ 0.14
VPS28-211ENST00000530790 HMGCRP04035 888 aa15.92■□□□□ 0.14
VPS28-211ENST00000530790 GJB1P08034 283 aa15.92■□□□□ 0.14
VPS28-211ENST00000530790 GJA8P48165 433 aa15.92■□□□□ 0.14
VPS28-211ENST00000530790 LBX2Q6XYB7 198 aa15.92■□□□□ 0.14
VPS28-211ENST00000530790 SHISA4Q96DD7 197 aa15.92■□□□□ 0.14
VPS28-211ENST00000530790 NUDT12Q9BQG2 462 aa15.92■□□□□ 0.14
VPS28-211ENST00000530790 NACAP1Q9BZK3 213 aa15.92■□□□□ 0.14
VPS28-211ENST00000530790 UNC93B1Q9H1C4 597 aa15.92■□□□□ 0.14
VPS28-211ENST00000530790 PORCNQ9H237 461 aa15.92■□□□□ 0.14
VPS28-211ENST00000530790 RWDD1Q9H446 243 aaPredicted RBP15.92■□□□□ 0.14
VPS28-211ENST00000530790 PDE4DIPQ5VU43 2346 aa15.92■□□□□ 0.14
VPS28-211ENST00000530790 PDE1AP54750 535 aa15.91■□□□□ 0.14
VPS28-211ENST00000530790 ATP2B2Q01814 1243 aa15.91■□□□□ 0.14
VPS28-211ENST00000530790 ZMYM1Q5SVZ6 1142 aa15.91■□□□□ 0.14
VPS28-211ENST00000530790 GPR142Q7Z601 462 aa15.91■□□□□ 0.14
VPS28-211ENST00000530790 EVI5LQ96CN4 794 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms