RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ST7Q9NRC1 585 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 ARID1BQ8NFD5 2236 aaPredicted RBP4.81□□□□□ -1.64
CD44-229ENST00000528672 SLC22A31A6NKX4 558 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 FANCGO15287 622 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 LEFTY1O75610 366 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 PGRP06401 933 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 PLCG1P19174 1290 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 ADMP35318 185 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 ETF1P62495 437 aaKnown RBP4.8□□□□□ -1.64
CD44-229ENST00000528672 PWP1Q13610 501 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 ARSHQ5FYA8 562 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 BAHD1Q8TBE0 780 aaPredicted RBP4.8□□□□□ -1.64
CD44-229ENST00000528672 GATA6Q92908 595 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 LRRC3Q9BY71 257 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 ATG3Q9NT62 314 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 PIM2Q9P1W9 311 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 DAGLAQ9Y4D2 1042 aa4.8□□□□□ -1.64
CD44-229ENST00000528672 LTBP3Q9NS15 1303 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 PRR19A6NJB7 356 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 BPNT1O95861 308 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 SSTR4P31391 388 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 CAP2P40123 477 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 IRAK1P51617 712 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 SLBPQ14493 270 aaKnown RBP eCLIP4.79□□□□□ -1.64
CD44-229ENST00000528672 PRAMEF13Q5VWM6 474 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 TDRD10Q5VZ19 366 aaKnown RBP4.79□□□□□ -1.64
CD44-229ENST00000528672 SMYD4Q8IYR2 804 aaPredicted RBP4.79□□□□□ -1.64
CD44-229ENST00000528672 SHKBP1Q8TBC3 707 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 FERD3LQ96RJ6 166 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 SLC9A7Q96T83 725 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 KIF2CQ99661 725 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 SRRTQ9BXP5 876 aaKnown RBP4.79□□□□□ -1.64
CD44-229ENST00000528672 WNT10AQ9GZT5 417 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 OSBPL2Q9H1P3 480 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 KANSL2Q9H9L4 492 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 PCOLCE2Q9UKZ9 415 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 SNCAIPQ9Y6H5 919 aa4.79□□□□□ -1.64
CD44-229ENST00000528672 CCDC85CA6NKD9 419 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 LRRN2O75325 713 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 FOSL1P15407 271 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 TAL1P17542 331 aaPredicted RBP4.78□□□□□ -1.64
CD44-229ENST00000528672 SPINK2P20155 84 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 FZD5Q13467 585 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 NFKBIBQ15653 356 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 CWF19L2Q2TBE0 894 aaKnown RBP4.78□□□□□ -1.64
CD44-229ENST00000528672 CYP27C1Q4G0S4 372 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 ANKS3Q6ZW76 656 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 HDXQ7Z353 690 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 DTX1Q86Y01 620 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 ANKRD13AQ8IZ07 590 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 ATG4CQ96DT6 458 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 MFSD14AQ96MC6 490 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 TBC1D32Q96NH3 1257 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 OSBPL1AQ9BXW6 950 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 MKNK2Q9HBH9 465 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 PICK1Q9NRD5 415 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 C1GALT1Q9NS00 363 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 ZNRF3Q9ULT6 936 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 MINPP1Q9UNW1 487 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 LEMD3Q9Y2U8 911 aa4.78□□□□□ -1.64
CD44-229ENST00000528672 FAM221BA6H8Z2 402 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 WASH4PA8MWX3 477 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 PRNPP04156 253 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 F13BP05160 661 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 SSBP05455 408 aaKnown RBP eCLIP4.77□□□□□ -1.65
CD44-229ENST00000528672 GIPRP48546 466 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 PPP2R5EQ16537 467 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 DUSP27Q5VZP5 1158 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 SDE2Q6IQ49 451 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 OGFOD3Q6PK18 319 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 CDH24Q86UP0 819 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 TMEM192Q8IY95 271 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 CKAP2LQ8IYA6 745 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 PPP1R13LQ8WUF5 828 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 CPLX3Q8WVH0 158 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 SEC16BQ96JE7 1060 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 TMEM87BQ96K49 555 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 EHMT1Q9H9B1 1298 aa4.77□□□□□ -1.65
CD44-229ENST00000528672 PRR33A8MZF0 331 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 WDR64B1ANS9 1081 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 C9IYK1 514 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 KLF4O43474 513 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 UBOX5O94941 541 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 SLITRK5O94991 958 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 TGFB1P01137 390 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 BMS1Q14692 1282 aaKnown RBP4.76□□□□□ -1.65
CD44-229ENST00000528672 NFE2L2Q16236 605 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 MSMPQ1L6U9 139 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 LARP1BQ659C4 914 aaKnown RBP4.76□□□□□ -1.65
CD44-229ENST00000528672 MRM1Q6IN84 353 aaKnown RBP4.76□□□□□ -1.65
CD44-229ENST00000528672 ZNF662Q6ZS27 426 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 PPFIBP1Q86W92 1011 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.76□□□□□ -1.65
CD44-229ENST00000528672 FAM13CQ8NE31 585 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 SSU72Q9NP77 194 aaKnown RBP4.76□□□□□ -1.65
CD44-229ENST00000528672 RNF114Q9Y508 228 aa4.76□□□□□ -1.65
CD44-229ENST00000528672 OAS3Q9Y6K5 1087 aaKnown RBP4.76□□□□□ -1.65
CD44-229ENST00000528672 PRR36Q9H6K5 1346 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 A0A1W2PQH9 124 aa4.75□□□□□ -1.65
CD44-229ENST00000528672 FAM170BA6NMN3 283 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms