RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 C16orf86Q6ZW13 317 aa12.84□□□□□ -0.35
CD44-227ENST00000528086 ANKRD13CQ8N6S4 541 aa12.84□□□□□ -0.35
CD44-227ENST00000528086 SH3TC2Q8TF17 1288 aa12.84□□□□□ -0.35
CD44-227ENST00000528086 AS3MTQ9HBK9 375 aa12.84□□□□□ -0.35
CD44-227ENST00000528086 RBPJLQ9UBG7 517 aa12.84□□□□□ -0.35
CD44-227ENST00000528086 C19orf81C9J6K1 198 aa12.83□□□□□ -0.36
CD44-227ENST00000528086 CNMDO75829 334 aa12.83□□□□□ -0.36
CD44-227ENST00000528086 PRKCZQ05513 592 aa12.83□□□□□ -0.36
CD44-227ENST00000528086 RAB3GAP1Q15042 981 aa12.83□□□□□ -0.36
CD44-227ENST00000528086 SBK1Q52WX2 424 aa12.83□□□□□ -0.36
CD44-227ENST00000528086 CCDC129Q6ZRS4 1044 aa12.83□□□□□ -0.36
CD44-227ENST00000528086 PLEKHM2Q8IWE5 1019 aa12.83□□□□□ -0.36
CD44-227ENST00000528086 KIAA1683Q9H0B3 1180 aa12.83□□□□□ -0.36
CD44-227ENST00000528086 NUCB1Q02818 461 aa12.82□□□□□ -0.36
CD44-227ENST00000528086 AAMPQ13685 434 aa12.82□□□□□ -0.36
CD44-227ENST00000528086 ZYXQ15942 572 aaKnown RBP12.82□□□□□ -0.36
CD44-227ENST00000528086 FAM110CQ1W6H9 321 aa12.82□□□□□ -0.36
CD44-227ENST00000528086 B4GALNT3Q6L9W6 998 aa12.82□□□□□ -0.36
CD44-227ENST00000528086 ZSCAN25Q6NSZ9 544 aa12.82□□□□□ -0.36
CD44-227ENST00000528086 USP17L2Q6R6M4 530 aa12.82□□□□□ -0.36
CD44-227ENST00000528086 GPATCH3Q96I76 525 aa12.82□□□□□ -0.36
CD44-227ENST00000528086 TRIM34Q9BYJ4 488 aa12.82□□□□□ -0.36
CD44-227ENST00000528086 MORF4L1Q9UBU8 362 aa12.82□□□□□ -0.36
CD44-227ENST00000528086 GJD2Q9UKL4 321 aa12.82□□□□□ -0.36
CD44-227ENST00000528086 A0A0G2JMZ2 1700 aa12.82□□□□□ -0.36
CD44-227ENST00000528086 ROBO3Q96MS0 1386 aa12.81□□□□□ -0.36
CD44-227ENST00000528086 ERC2O15083 957 aa12.81□□□□□ -0.36
CD44-227ENST00000528086 VCAM1P19320 739 aa12.81□□□□□ -0.36
CD44-227ENST00000528086 PDE4AP27815 886 aa12.81□□□□□ -0.36
CD44-227ENST00000528086 HERVK_113P62684 666 aa12.81□□□□□ -0.36
CD44-227ENST00000528086 MTFR1Q15390 333 aa12.81□□□□□ -0.36
CD44-227ENST00000528086 VPS53Q5VIR6 699 aa12.81□□□□□ -0.36
CD44-227ENST00000528086 NKX2-3Q8TAU0 364 aa12.81□□□□□ -0.36
CD44-227ENST00000528086 SMCR8Q8TEV9 937 aaPredicted RBP12.81□□□□□ -0.36
CD44-227ENST00000528086 MYPNQ86TC9 1320 aa12.81□□□□□ -0.36
CD44-227ENST00000528086 COL11A1P12107 1806 aaPredicted RBP12.81□□□□□ -0.36
CD44-227ENST00000528086 A0A0D9SFI3 127 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 FMNL1O95466 1100 aaPredicted RBP12.8□□□□□ -0.36
CD44-227ENST00000528086 GNRH1P01148 92 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 ZFYP08048 801 aaPredicted RBP12.8□□□□□ -0.36
CD44-227ENST00000528086 EN2P19622 333 aaPredicted RBP12.8□□□□□ -0.36
CD44-227ENST00000528086 RASA1P20936 1047 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 FLT3LGP49771 235 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 MLLT1Q03111 559 aaPredicted RBP12.8□□□□□ -0.36
CD44-227ENST00000528086 GIMAP6Q6P9H5 292 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 CATSPERGQ6ZRH7 1159 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 CHD1LQ86WJ1 897 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 IFNL3Q8IZI9 196 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 STK11IPQ8N1F8 1099 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 FAM227BQ96M60 508 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 FSD1Q9BTV5 496 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 PORCNQ9H237 461 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 INCENPQ9NQS7 918 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 SWAP70Q9UH65 585 aa12.8□□□□□ -0.36
CD44-227ENST00000528086 IGKV6D-41A0A0C4DH26 115 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 PATL2C9JE40 543 aaKnown RBP12.79□□□□□ -0.36
CD44-227ENST00000528086 MYCP01106 439 aaPredicted RBP12.79□□□□□ -0.36
CD44-227ENST00000528086 ELNP15502 786 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 GCLCP48506 637 aaPredicted RBP12.79□□□□□ -0.36
CD44-227ENST00000528086 FCGRTP55899 365 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 KIF22Q14807 665 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 SLC9C1Q4G0N8 1177 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 TMEM179Q6ZVK1 233 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 SHISA4Q96DD7 197 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 RWDD1Q9H446 243 aaPredicted RBP12.79□□□□□ -0.36
CD44-227ENST00000528086 OSBPL3Q9H4L5 887 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 TMOD4Q9NZQ9 345 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 BTBD7Q9P203 1132 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 PNMA3Q9UL41 463 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 MYH4Q9Y623 1939 aa12.79□□□□□ -0.36
CD44-227ENST00000528086 SPDYE16A6NNV3 312 aaPredicted RBP12.78□□□□□ -0.36
CD44-227ENST00000528086 MPHOSPH10O00566 681 aaKnown RBP12.78□□□□□ -0.36
CD44-227ENST00000528086 EEF2P13639 858 aaKnown RBP12.78□□□□□ -0.36
CD44-227ENST00000528086 PRMT2P55345 433 aa12.78□□□□□ -0.36
CD44-227ENST00000528086 ZNF589Q86UQ0 364 aaPredicted RBP12.78□□□□□ -0.36
CD44-227ENST00000528086 USP6NLQ92738 828 aa12.78□□□□□ -0.36
CD44-227ENST00000528086 EVI5LQ96CN4 794 aa12.78□□□□□ -0.36
CD44-227ENST00000528086 RPAP3Q9H6T3 665 aaPredicted RBP12.78□□□□□ -0.36
CD44-227ENST00000528086 CABP5Q9NP86 173 aa12.78□□□□□ -0.36
CD44-227ENST00000528086 ARPP21Q9UBL0 812 aaPredicted RBP12.78□□□□□ -0.36
CD44-227ENST00000528086 TAOK2Q9UL54 1235 aa12.78□□□□□ -0.36
CD44-227ENST00000528086 TMX2Q9Y320 296 aa12.78□□□□□ -0.36
CD44-227ENST00000528086 MINDY4BA8MYZ0 360 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 USP17L15C9J2P7 530 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 USP17L13C9JLJ4 530 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 USP17L11C9JVI0 530 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 USP17L18D6R9N7 530 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 USP17L22D6RA61 530 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 USP17L17D6RBQ6 530 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 USP17L19D6RCP7 530 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 USP17L20D6RJB6 530 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 PRDM1O75626 825 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 GRK4P32298 578 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 ERVK-9P63128 1117 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 ERVK-24P63145 666 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 IRX3P78415 501 aaPredicted RBP12.77□□□□□ -0.37
CD44-227ENST00000528086 USP17L24Q0WX57 530 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 TRIM32Q13049 653 aa12.77□□□□□ -0.37
CD44-227ENST00000528086 PABPC4Q13310 644 aaKnown RBP eCLIP12.77□□□□□ -0.37
CD44-227ENST00000528086 IRF5Q13568 498 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms