RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 TCP11L1Q9NUJ3 509 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 TNKSO95271 1327 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 FIBPO43427 364 aa22■■□□□ 1.11
VPS28-207ENST00000526977 LMOD1P29536 600 aaPredicted RBP22■■□□□ 1.11
VPS28-207ENST00000526977 FAM173BQ6P4H8 233 aa22■■□□□ 1.11
VPS28-207ENST00000526977 NFXL1Q6ZNB6 911 aa22■■□□□ 1.11
VPS28-207ENST00000526977 METTL16Q86W50 562 aaKnown RBP22■■□□□ 1.11
VPS28-207ENST00000526977 CRACR2BQ8N4Y2 399 aaPredicted RBP22■■□□□ 1.11
VPS28-207ENST00000526977 CCDC69A6NI79 296 aa21.99■■□□□ 1.11
VPS28-207ENST00000526977 SEC23AQ15436 765 aa21.99■■□□□ 1.11
VPS28-207ENST00000526977 TRIM34Q9BYJ4 488 aa21.99■■□□□ 1.11
VPS28-207ENST00000526977 SYNE3Q6ZMZ3 975 aa21.99■■□□□ 1.11
VPS28-207ENST00000526977 ENAHQ8N8S7 591 aaPredicted RBP21.99■■□□□ 1.11
VPS28-207ENST00000526977 CSRNP1Q96S65 589 aa21.99■■□□□ 1.11
VPS28-207ENST00000526977 CNTNAP1P78357 1384 aa21.98■■□□□ 1.11
VPS28-207ENST00000526977 GOLGA8BA8MQT2 603 aa21.98■■□□□ 1.11
VPS28-207ENST00000526977 H3BQV1 296 aa21.98■■□□□ 1.11
VPS28-207ENST00000526977 EPS15P42566 896 aa21.98■■□□□ 1.11
VPS28-207ENST00000526977 UBE2HP62256 183 aa21.98■■□□□ 1.11
VPS28-207ENST00000526977 CSPP1Q1MSJ5 1256 aa21.98■■□□□ 1.11
VPS28-207ENST00000526977 IFFO2Q5TF58 517 aa21.98■■□□□ 1.11
VPS28-207ENST00000526977 DGKHQ86XP1 1220 aa21.98■■□□□ 1.11
VPS28-207ENST00000526977 NEDD1Q8NHV4 660 aa21.98■■□□□ 1.11
VPS28-207ENST00000526977 SLC12A7Q9Y666 1083 aa21.98■■□□□ 1.11
VPS28-207ENST00000526977 FDPSP14324 419 aaKnown RBP21.97■■□□□ 1.11
VPS28-207ENST00000526977 IFIT1BQ5T764 474 aaKnown RBP21.97■■□□□ 1.11
VPS28-207ENST00000526977 CCDC17Q96LX7 622 aa21.97■■□□□ 1.11
VPS28-207ENST00000526977 HERC5Q9UII4 1024 aaKnown RBP21.97■■□□□ 1.11
VPS28-207ENST00000526977 KIF3AQ9Y496 699 aa21.97■■□□□ 1.11
VPS28-207ENST00000526977 DHX16O60231 1041 aaKnown RBP21.97■■□□□ 1.11
VPS28-207ENST00000526977 PPFIA3O75145 1194 aa21.97■■□□□ 1.11
VPS28-207ENST00000526977 KRT85P78386 507 aa21.97■■□□□ 1.11
VPS28-207ENST00000526977 RESTQ13127 1097 aa21.97■■□□□ 1.11
VPS28-207ENST00000526977 APOA5Q6Q788 366 aa21.97■■□□□ 1.11
VPS28-207ENST00000526977 SENP2Q9HC62 589 aa21.97■■□□□ 1.11
VPS28-207ENST00000526977 SHMT1P34896 483 aa21.96■■□□□ 1.11
VPS28-207ENST00000526977 RCAN1P53805 252 aa21.96■■□□□ 1.11
VPS28-207ENST00000526977 RAB11FIP4Q86YS3 637 aa21.96■■□□□ 1.11
VPS28-207ENST00000526977 ADARB2Q9NS39 739 aaKnown RBP21.96■■□□□ 1.11
VPS28-207ENST00000526977 HACL1Q9UJ83 578 aa21.96■■□□□ 1.11
VPS28-207ENST00000526977 ZBTB43O43298 467 aa21.96■■□□□ 1.11
VPS28-207ENST00000526977 TATDN1Q6P1N9 297 aa21.96■■□□□ 1.11
VPS28-207ENST00000526977 ANKS1AQ92625 1134 aa21.96■■□□□ 1.11
VPS28-207ENST00000526977 L3MBTL3Q96JM7 780 aaPredicted RBP21.96■■□□□ 1.11
VPS28-207ENST00000526977 ZSCAN16Q9H4T2 348 aaPredicted RBP21.96■■□□□ 1.11
VPS28-207ENST00000526977 IL17RBQ9NRM6 502 aa21.96■■□□□ 1.11
VPS28-207ENST00000526977 RASA3Q14644 834 aa21.95■■□□□ 1.1
VPS28-207ENST00000526977 TMEM39BQ9GZU3 492 aa21.95■■□□□ 1.1
VPS28-207ENST00000526977 DNAJC18Q9H819 358 aa21.95■■□□□ 1.1
VPS28-207ENST00000526977 GLTPD2A6NH11 291 aa21.94■■□□□ 1.1
VPS28-207ENST00000526977 TBC1D12O60347 775 aa21.94■■□□□ 1.1
VPS28-207ENST00000526977 NMT2O60551 498 aa21.94■■□□□ 1.1
VPS28-207ENST00000526977 TRPM4Q8TD43 1214 aa21.94■■□□□ 1.1
VPS28-207ENST00000526977 TFIP11Q9UBB9 837 aaKnown RBP21.94■■□□□ 1.1
VPS28-207ENST00000526977 APOBEC3FQ8IUX4 373 aaKnown RBP21.94■■□□□ 1.1
VPS28-207ENST00000526977 PANK2Q9BZ23 570 aa21.94■■□□□ 1.1
VPS28-207ENST00000526977 PLIN4Q96Q06 1357 aa21.93■■□□□ 1.1
VPS28-207ENST00000526977 METAP2P50579 478 aaKnown RBP eCLIP21.93■■□□□ 1.1
VPS28-207ENST00000526977 FOSBP53539 338 aa21.93■■□□□ 1.1
VPS28-207ENST00000526977 PPP2R5BQ15173 497 aa21.93■■□□□ 1.1
VPS28-207ENST00000526977 CERKLQ49MI3 558 aaPredicted RBP21.93■■□□□ 1.1
VPS28-207ENST00000526977 RCSD1Q6JBY9 416 aa21.93■■□□□ 1.1
VPS28-207ENST00000526977 CATIPQ7Z7H3 387 aa21.93■■□□□ 1.1
VPS28-207ENST00000526977 ZNF654Q8IZM8 581 aa21.93■■□□□ 1.1
VPS28-207ENST00000526977 SYAP1Q96A49 352 aaPredicted RBP21.93■■□□□ 1.1
VPS28-207ENST00000526977 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.93■■□□□ 1.1
VPS28-207ENST00000526977 PGAP2Q9UHJ9 254 aa21.93■■□□□ 1.1
VPS28-207ENST00000526977 SYCE3A1L190 88 aa21.92■■□□□ 1.1
VPS28-207ENST00000526977 CALM1P0DP23 149 aa21.92■■□□□ 1.1
VPS28-207ENST00000526977 CALM2P0DP24 149 aa21.92■■□□□ 1.1
VPS28-207ENST00000526977 CALM3P0DP25 149 aa21.92■■□□□ 1.1
VPS28-207ENST00000526977 PPP4R3BQ5MIZ7 849 aa21.92■■□□□ 1.1
VPS28-207ENST00000526977 DEFB129Q9H1M3 183 aa21.92■■□□□ 1.1
VPS28-207ENST00000526977 CPLX1O14810 134 aa21.92■■□□□ 1.1
VPS28-207ENST00000526977 AKR1B1P15121 316 aa21.92■■□□□ 1.1
VPS28-207ENST00000526977 ADD1P35611 737 aaKnown RBP21.92■■□□□ 1.1
VPS28-207ENST00000526977 HIRAP54198 1017 aaPredicted RBP21.92■■□□□ 1.1
VPS28-207ENST00000526977 ANGEL2Q5VTE6 544 aaKnown RBP21.92■■□□□ 1.1
VPS28-207ENST00000526977 MICU3Q86XE3 530 aa21.92■■□□□ 1.1
VPS28-207ENST00000526977 SCAND2PQ9GZW5 306 aaPredicted RBP21.92■■□□□ 1.1
VPS28-207ENST00000526977 KAT14Q9H8E8 782 aa21.92■■□□□ 1.1
VPS28-207ENST00000526977 ASTN2O75129 1339 aaPredicted RBP21.91■■□□□ 1.1
VPS28-207ENST00000526977 ELP1O95163 1332 aa21.91■■□□□ 1.1
VPS28-207ENST00000526977 NOVP48745 357 aa21.91■■□□□ 1.1
VPS28-207ENST00000526977 MAP3K10Q02779 954 aa21.91■■□□□ 1.1
VPS28-207ENST00000526977 TPRNQ4KMQ1 711 aa21.91■■□□□ 1.1
VPS28-207ENST00000526977 LRSAM1Q6UWE0 723 aa21.91■■□□□ 1.1
VPS28-207ENST00000526977 ORC3Q9UBD5 711 aaPredicted RBP21.91■■□□□ 1.1
VPS28-207ENST00000526977 STX8Q9UNK0 236 aa21.91■■□□□ 1.1
VPS28-207ENST00000526977 NID2Q14112 1375 aa21.91■■□□□ 1.1
VPS28-207ENST00000526977 CCDC196A0A1B0GTZ2 297 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 DDAH1O94760 285 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.9■■□□□ 1.1
VPS28-207ENST00000526977 PITPNM2Q9BZ72 1349 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 DCAF8L1A6NGE4 600 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 FAM196BA6NMK8 535 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 GOLGA8AA7E2F4 631 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 CPLX2Q6PUV4 134 aaKnown RBP21.9■■□□□ 1.1
VPS28-207ENST00000526977 FANCBQ8NB91 859 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 LEO1Q8WVC0 666 aaPredicted RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms