RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 GIMAP6Q6P9H5 292 aa8.82□□□□□ -1
SKP1-213ENST00000524288 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.82□□□□□ -1
SKP1-213ENST00000524288 ZNF507Q8TCN5 953 aa8.82□□□□□ -1
SKP1-213ENST00000524288 GATAD2BQ8WXI9 593 aa8.82□□□□□ -1
SKP1-213ENST00000524288 GAL3ST3Q96A11 431 aa8.82□□□□□ -1
SKP1-213ENST00000524288 PIF1Q9H611 641 aa8.82□□□□□ -1
SKP1-213ENST00000524288 SNCAIPQ9Y6H5 919 aa8.82□□□□□ -1
SKP1-213ENST00000524288 BIN1O00499 593 aa8.81□□□□□ -1
SKP1-213ENST00000524288 SOX9P48436 509 aa8.81□□□□□ -1
SKP1-213ENST00000524288 RBL2Q08999 1139 aa8.81□□□□□ -1
SKP1-213ENST00000524288 FBXW10Q5XX13 1052 aa8.81□□□□□ -1
SKP1-213ENST00000524288 CYFIP1Q7L576 1253 aa8.81□□□□□ -1
SKP1-213ENST00000524288 FAM214BQ7L5A3 538 aa8.81□□□□□ -1
SKP1-213ENST00000524288 SPATA32Q96LK8 384 aa8.81□□□□□ -1
SKP1-213ENST00000524288 HEXIM2Q96MH2 286 aaKnown RBP8.81□□□□□ -1
SKP1-213ENST00000524288 HIRIP3Q9BW71 556 aaPredicted RBP8.81□□□□□ -1
SKP1-213ENST00000524288 ZSWIM4Q9H7M6 989 aa8.81□□□□□ -1
SKP1-213ENST00000524288 U3KQE9 123 aa8.81□□□□□ -1
SKP1-213ENST00000524288 FAM221AA4D161 298 aa8.8□□□□□ -1
SKP1-213ENST00000524288 LRIG2O94898 1065 aa8.8□□□□□ -1
SKP1-213ENST00000524288 CD8BP10966 210 aa8.8□□□□□ -1
SKP1-213ENST00000524288 YBX3P16989 372 aaKnown RBP eCLIP8.8□□□□□ -11e-15■□□□□ 8.2
SKP1-213ENST00000524288 CAP2P40123 477 aa8.8□□□□□ -1
SKP1-213ENST00000524288 CDK8P49336 464 aa8.8□□□□□ -1
SKP1-213ENST00000524288 BNIP3Q12983 259 aa8.8□□□□□ -1
SKP1-213ENST00000524288 BMS1Q14692 1282 aaKnown RBP8.8□□□□□ -1
SKP1-213ENST00000524288 AOC3Q16853 763 aa8.8□□□□□ -1
SKP1-213ENST00000524288 ZNF792Q3KQV3 632 aa8.8□□□□□ -1
SKP1-213ENST00000524288 LRFN4Q6PJG9 635 aa8.8□□□□□ -1
SKP1-213ENST00000524288 GK5Q6ZS86 529 aa8.8□□□□□ -1
SKP1-213ENST00000524288 KRTAP1-3Q8IUG1 177 aa8.8□□□□□ -1
SKP1-213ENST00000524288 HNRNPLLQ8WVV9 542 aaKnown RBP8.8□□□□□ -1
SKP1-213ENST00000524288 BRMS1Q9HCU9 246 aa8.8□□□□□ -1
SKP1-213ENST00000524288 PLAGL2Q9UPG8 496 aa8.8□□□□□ -1
SKP1-213ENST00000524288 BPNT1O95861 308 aa8.79□□□□□ -1
SKP1-213ENST00000524288 ANGEL2Q5VTE6 544 aaKnown RBP8.79□□□□□ -1
SKP1-213ENST00000524288 ANKS3Q6ZW76 656 aa8.79□□□□□ -1
SKP1-213ENST00000524288 ARMCX6Q7L4S7 300 aa8.79□□□□□ -1
SKP1-213ENST00000524288 SLITRK4Q8IW52 837 aa8.79□□□□□ -1
SKP1-213ENST00000524288 CKAP2LQ8IYA6 745 aa8.79□□□□□ -1
SKP1-213ENST00000524288 SRRTQ9BXP5 876 aaKnown RBP8.79□□□□□ -1
SKP1-213ENST00000524288 OSBPL2Q9H1P3 480 aa8.79□□□□□ -1
SKP1-213ENST00000524288 MAPK8IP1Q9UQF2 711 aa8.79□□□□□ -1
SKP1-213ENST00000524288 TACC3Q9Y6A5 838 aa8.79□□□□□ -1
SKP1-213ENST00000524288 GRIN3BO60391 1043 aa8.78□□□□□ -1
SKP1-213ENST00000524288 CILPO75339 1184 aa8.78□□□□□ -1
SKP1-213ENST00000524288 ITIH2P19823 946 aa8.78□□□□□ -1
SKP1-213ENST00000524288 MPP2Q14168 576 aa8.78□□□□□ -1
SKP1-213ENST00000524288 INPP5AQ14642 412 aa8.78□□□□□ -1
SKP1-213ENST00000524288 CWF19L2Q2TBE0 894 aaKnown RBP8.78□□□□□ -1
SKP1-213ENST00000524288 REC114Q7Z4M0 266 aa8.78□□□□□ -1
SKP1-213ENST00000524288 UBE3DQ7Z6J8 389 aa8.78□□□□□ -1
SKP1-213ENST00000524288 ASB11Q8WXH4 323 aa8.78□□□□□ -1
SKP1-213ENST00000524288 PLPPR2Q96GM1 343 aa8.78□□□□□ -1
SKP1-213ENST00000524288 FERD3LQ96RJ6 166 aa8.78□□□□□ -1
SKP1-213ENST00000524288 WNT10AQ9GZT5 417 aa8.78□□□□□ -1
SKP1-213ENST00000524288 PRDM5Q9NQX1 630 aaPredicted RBP8.78□□□□□ -1
SKP1-213ENST00000524288 PRAMEF27A3QJZ7 478 aa8.77□□□□□ -1.01
SKP1-213ENST00000524288 GNAT3A8MTJ3 354 aa8.77□□□□□ -1.01
SKP1-213ENST00000524288 CLCN7P51798 805 aa8.77□□□□□ -1.01
SKP1-213ENST00000524288 ATG4DQ86TL0 474 aaPredicted RBP8.77□□□□□ -1.01
SKP1-213ENST00000524288 FOXQ1Q9C009 403 aa8.77□□□□□ -1.01
SKP1-213ENST00000524288 PAPLNO95428 1278 aa8.76□□□□□ -1.01
SKP1-213ENST00000524288 EOMESO95936 686 aa8.76□□□□□ -1.01
SKP1-213ENST00000524288 CLCQ05315 142 aa8.76□□□□□ -1.01
SKP1-213ENST00000524288 COL9A2Q14055 689 aaPredicted RBP8.76□□□□□ -1.01
SKP1-213ENST00000524288 WIPI1Q5MNZ9 446 aaPredicted RBP8.76□□□□□ -1.01
SKP1-213ENST00000524288 C22orf34Q6ZV56 151 aa8.76□□□□□ -1.01
SKP1-213ENST00000524288 CCDC84Q86UT8 332 aaPredicted RBP8.76□□□□□ -1.01
SKP1-213ENST00000524288 SPACA3Q8IXA5 215 aa8.76□□□□□ -1.01
SKP1-213ENST00000524288 MFSD2AQ8NA29 543 aa8.76□□□□□ -1.01
SKP1-213ENST00000524288 PI4K2BQ8TCG2 481 aa8.76□□□□□ -1.01
SKP1-213ENST00000524288 LRRC3Q9BY71 257 aa8.76□□□□□ -1.01
SKP1-213ENST00000524288 STRIP2Q9ULQ0 834 aa8.76□□□□□ -1.01
SKP1-213ENST00000524288 ROBO2Q9HCK4 1378 aa8.75□□□□□ -1.01
SKP1-213ENST00000524288 SMAD7O15105 426 aaKnown RBP8.75□□□□□ -1.01
SKP1-213ENST00000524288 ETF1P62495 437 aaKnown RBP8.75□□□□□ -1.01
SKP1-213ENST00000524288 ZNF746Q6NUN9 644 aaPredicted RBP8.75□□□□□ -1.01
SKP1-213ENST00000524288 SLC23A3Q6PIS1 610 aa8.75□□□□□ -1.01
SKP1-213ENST00000524288 HID1Q8IV36 788 aa8.75□□□□□ -1.01
SKP1-213ENST00000524288 FAM169BQ8N8A8 192 aa8.75□□□□□ -1.01
SKP1-213ENST00000524288 SHDQ96IW2 340 aa8.75□□□□□ -1.01
SKP1-213ENST00000524288 RC3H2Q9HBD1 1191 aaKnown RBP8.75□□□□□ -1.01
SKP1-213ENST00000524288 MBNL3Q9NUK0 354 aaKnown RBP8.75□□□□□ -1.01
SKP1-213ENST00000524288 POLR3KQ9Y2Y1 108 aaPredicted RBP8.75□□□□□ -1.01
SKP1-213ENST00000524288 RNASE1P07998 156 aaKnown RBP8.74□□□□□ -1.01
SKP1-213ENST00000524288 ZNF165P49910 485 aa8.74□□□□□ -1.01
SKP1-213ENST00000524288 EIF6P56537 245 aaKnown RBP8.74□□□□□ -1.01
SKP1-213ENST00000524288 RPL6Q02878 288 aaKnown RBP8.74□□□□□ -1.01
SKP1-213ENST00000524288 SLBPQ14493 270 aaKnown RBP eCLIP8.74□□□□□ -1.01
SKP1-213ENST00000524288 NKPD1Q17RQ9 610 aa8.74□□□□□ -1.01
SKP1-213ENST00000524288 SOGA3Q5TF21 947 aa8.74□□□□□ -1.01
SKP1-213ENST00000524288 POU5F2Q8N7G0 328 aa8.74□□□□□ -1.01
SKP1-213ENST00000524288 COX4I2Q96KJ9 171 aa8.74□□□□□ -1.01
SKP1-213ENST00000524288 TRIM55Q9BYV6 548 aa8.74□□□□□ -1.01
SKP1-213ENST00000524288 FBRSQ9HAH7 460 aa8.74□□□□□ -1.01
SKP1-213ENST00000524288 PCDHB14Q9Y5E9 798 aa8.74□□□□□ -1.01
SKP1-213ENST00000524288 CCDC85CA6NKD9 419 aa8.73□□□□□ -1.01
SKP1-213ENST00000524288 CD96P40200 585 aa8.73□□□□□ -1.01
SKP1-213ENST00000524288 DIEXFQ68CQ4 756 aaKnown RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms