RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 TMEM67Q5HYA8 995 aa10.5□□□□□ -0.73
LSM1-202ENST00000520286 DYMQ7RTS9 669 aa10.5□□□□□ -0.73
LSM1-202ENST00000520286 UBE3DQ7Z6J8 389 aa10.5□□□□□ -0.73
LSM1-202ENST00000520286 PPFIBP1Q86W92 1011 aa10.5□□□□□ -0.73
LSM1-202ENST00000520286 NEDD1Q8NHV4 660 aa10.5□□□□□ -0.73
LSM1-202ENST00000520286 WHAMMQ8TF30 809 aa10.5□□□□□ -0.73
LSM1-202ENST00000520286 TRIM11Q96F44 468 aa10.5□□□□□ -0.73
LSM1-202ENST00000520286 PIDD1Q9HB75 910 aa10.5□□□□□ -0.73
LSM1-202ENST00000520286 PCDH12Q9NPG4 1184 aa10.5□□□□□ -0.73
LSM1-202ENST00000520286 FAM86C1Q9NVL1 165 aa10.5□□□□□ -0.73
LSM1-202ENST00000520286 ADCY3O60266 1144 aa10.49□□□□□ -0.73
LSM1-202ENST00000520286 RNGTTO60942 597 aaKnown RBP10.49□□□□□ -0.73
LSM1-202ENST00000520286 TP53P04637 393 aaPredicted RBP10.49□□□□□ -0.73
LSM1-202ENST00000520286 DRD2P14416 443 aa10.49□□□□□ -0.73
LSM1-202ENST00000520286 PRAMEF13Q5VWM6 474 aa10.49□□□□□ -0.73
LSM1-202ENST00000520286 TDRD10Q5VZ19 366 aaKnown RBP10.49□□□□□ -0.73
LSM1-202ENST00000520286 ZBTB38Q8NAP3 1195 aaPredicted RBP10.49□□□□□ -0.73
LSM1-202ENST00000520286 BAHD1Q8TBE0 780 aaPredicted RBP10.49□□□□□ -0.73
LSM1-202ENST00000520286 ISL2Q96A47 359 aa10.49□□□□□ -0.73
LSM1-202ENST00000520286 SLC26A8Q96RN1 970 aa10.49□□□□□ -0.73
LSM1-202ENST00000520286 AGRPO00253 132 aa10.48□□□□□ -0.73
LSM1-202ENST00000520286 NAT2P11245 290 aa10.48□□□□□ -0.73
LSM1-202ENST00000520286 CAP2P40123 477 aa10.48□□□□□ -0.73
LSM1-202ENST00000520286 ZNF143P52747 638 aaPredicted RBP10.48□□□□□ -0.73
LSM1-202ENST00000520286 SV2CQ496J9 727 aa10.48□□□□□ -0.73
LSM1-202ENST00000520286 IGF2-ASQ6U949 168 aa10.48□□□□□ -0.73
LSM1-202ENST00000520286 C12orf50Q8NA57 414 aaPredicted RBP10.48□□□□□ -0.73
LSM1-202ENST00000520286 CYB5D2Q8WUJ1 264 aa10.48□□□□□ -0.73
LSM1-202ENST00000520286 SGSM3Q96HU1 749 aa10.48□□□□□ -0.73
LSM1-202ENST00000520286 MRPL18Q9H0U6 180 aaKnown RBP10.48□□□□□ -0.73
LSM1-202ENST00000520286 GSX1Q9H4S2 264 aaPredicted RBP10.48□□□□□ -0.73
LSM1-202ENST00000520286 SSU72Q9NP77 194 aaKnown RBP10.48□□□□□ -0.73
LSM1-202ENST00000520286 CLEC3AO75596 197 aa10.47□□□□□ -0.73
LSM1-202ENST00000520286 CST3P01034 146 aaPredicted RBP10.47□□□□□ -0.73
LSM1-202ENST00000520286 GMPRP36959 345 aa10.47□□□□□ -0.73
LSM1-202ENST00000520286 ASPAP45381 313 aa10.47□□□□□ -0.73
LSM1-202ENST00000520286 MASP1P48740 699 aa10.47□□□□□ -0.73
LSM1-202ENST00000520286 ZC3H12BQ5HYM0 836 aaKnown RBP10.47□□□□□ -0.73
LSM1-202ENST00000520286 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.47□□□□□ -0.73
LSM1-202ENST00000520286 PLVAPQ9BX97 442 aa10.47□□□□□ -0.73
LSM1-202ENST00000520286 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.47□□□□□ -0.73
LSM1-202ENST00000520286 ENAMQ9NRM1 1142 aa10.47□□□□□ -0.73
LSM1-202ENST00000520286 CD2APQ9Y5K6 639 aa10.47□□□□□ -0.73
LSM1-202ENST00000520286 ANKRD34BA5PLL1 514 aa10.46□□□□□ -0.73
LSM1-202ENST00000520286 C9IYK1 514 aa10.46□□□□□ -0.73
LSM1-202ENST00000520286 TIAF1O95411 115 aa10.46□□□□□ -0.73
LSM1-202ENST00000520286 TRIM28Q13263 835 aaKnown RBP10.46□□□□□ -0.73
LSM1-202ENST00000520286 DALRD3Q5D0E6 543 aaKnown RBP10.46□□□□□ -0.73
LSM1-202ENST00000520286 FDX2Q6P4F2 183 aa10.46□□□□□ -0.73
LSM1-202ENST00000520286 SMARCC1Q92922 1105 aaPredicted RBP10.46□□□□□ -0.73
LSM1-202ENST00000520286 APBA2Q99767 749 aa10.46□□□□□ -0.73
LSM1-202ENST00000520286 FOXQ1Q9C009 403 aa10.46□□□□□ -0.73
LSM1-202ENST00000520286 SUSD2Q9UGT4 822 aa10.46□□□□□ -0.73
LSM1-202ENST00000520286 ACTL7BQ9Y614 415 aa10.46□□□□□ -0.73
LSM1-202ENST00000520286 SPDYE3A6NKU9 549 aa10.45□□□□□ -0.74
LSM1-202ENST00000520286 RAB11FIP3O75154 756 aa10.45□□□□□ -0.74
LSM1-202ENST00000520286 HEATR6Q6AI08 1181 aaKnown RBP10.45□□□□□ -0.74
LSM1-202ENST00000520286 SMYD4Q8IYR2 804 aaPredicted RBP10.45□□□□□ -0.74
LSM1-202ENST00000520286 XAGE3Q8WTP9 111 aa10.45□□□□□ -0.74
LSM1-202ENST00000520286 HAUS7Q99871 368 aa10.45□□□□□ -0.74
LSM1-202ENST00000520286 FAM105AQ9NUU6 356 aa10.45□□□□□ -0.74
LSM1-202ENST00000520286 PLAAQ9Y263 795 aa10.45□□□□□ -0.74
LSM1-202ENST00000520286 FAM229AH3BQW9 127 aa10.44□□□□□ -0.74
LSM1-202ENST00000520286 EPHX1P07099 455 aa10.44□□□□□ -0.74
LSM1-202ENST00000520286 AXDND1Q5T1B0 1012 aaPredicted RBP10.44□□□□□ -0.74
LSM1-202ENST00000520286 LINC00114Q6XXX2 140 aa10.44□□□□□ -0.74
LSM1-202ENST00000520286 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.44□□□□□ -0.74
LSM1-202ENST00000520286 CCDC144CPQ8IYA2 1237 aa10.44□□□□□ -0.74
LSM1-202ENST00000520286 C2CD4AQ8NCU7 369 aaPredicted RBP10.44□□□□□ -0.74
LSM1-202ENST00000520286 CCDC163A0A0D9SF12 145 aa10.43□□□□□ -0.74
LSM1-202ENST00000520286 A0A1W2PQU0 124 aa10.43□□□□□ -0.74
LSM1-202ENST00000520286 ELNP15502 786 aa10.43□□□□□ -0.74
LSM1-202ENST00000520286 SNRPNP63162 240 aaKnown RBP10.43□□□□□ -0.74
LSM1-202ENST00000520286 C21orf62-AS1Q17RA5 79 aa10.43□□□□□ -0.74
LSM1-202ENST00000520286 LCE2CQ5TA81 110 aa10.43□□□□□ -0.74
LSM1-202ENST00000520286 ZNF385CQ66K41 422 aaPredicted RBP10.43□□□□□ -0.74
LSM1-202ENST00000520286 ANKRD34AQ69YU3 496 aa10.43□□□□□ -0.74
LSM1-202ENST00000520286 ZNF512BQ96KM6 892 aaPredicted RBP10.43□□□□□ -0.74
LSM1-202ENST00000520286 LRP2BPQ9P2M1 347 aa10.43□□□□□ -0.74
LSM1-202ENST00000520286 PCOLCE2Q9UKZ9 415 aa10.43□□□□□ -0.74
LSM1-202ENST00000520286 GNB5O14775 395 aa10.42□□□□□ -0.74
LSM1-202ENST00000520286 LRIG2O94898 1065 aa10.42□□□□□ -0.74
LSM1-202ENST00000520286 AMPD3Q01432 767 aa10.42□□□□□ -0.74
LSM1-202ENST00000520286 FOXB2Q5VYV0 432 aa10.42□□□□□ -0.74
LSM1-202ENST00000520286 ARMCX6Q7L4S7 300 aa10.42□□□□□ -0.74
LSM1-202ENST00000520286 AGGF1Q8N302 714 aaeCLIP10.42□□□□□ -0.74
LSM1-202ENST00000520286 SVOPQ8N4V2 548 aa10.42□□□□□ -0.74
LSM1-202ENST00000520286 MFSD2AQ8NA29 543 aa10.42□□□□□ -0.74
LSM1-202ENST00000520286 PPP1R14AQ96A00 147 aa10.42□□□□□ -0.74
LSM1-202ENST00000520286 MKRN2Q9H000 416 aaKnown RBP10.42□□□□□ -0.74
LSM1-202ENST00000520286 ARHGEF4Q9NR80 690 aa10.42□□□□□ -0.74
LSM1-202ENST00000520286 CBFA2T2O43439 604 aa10.41□□□□□ -0.74
LSM1-202ENST00000520286 L1CAMP32004 1257 aa10.41□□□□□ -0.74
LSM1-202ENST00000520286 DCAF15Q66K64 600 aa10.41□□□□□ -0.74
LSM1-202ENST00000520286 PPP1R13LQ8WUF5 828 aa10.41□□□□□ -0.74
LSM1-202ENST00000520286 FGD4Q96M96 766 aa10.41□□□□□ -0.74
LSM1-202ENST00000520286 CDC6Q99741 560 aa10.41□□□□□ -0.74
LSM1-202ENST00000520286 KLHL25Q9H0H3 589 aa10.41□□□□□ -0.74
LSM1-202ENST00000520286 TRAV20A0A0B4J274 112 aa10.4□□□□□ -0.74
LSM1-202ENST00000520286 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms