RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 LDHBP07195 334 aaKnown RBP17.01■□□□□ 0.31
NUP54-217ENST00000514987 TRAPPC10P48553 1259 aa17.01■□□□□ 0.31
NUP54-217ENST00000514987 ZNF804AQ7Z570 1209 aa17.01■□□□□ 0.31
NUP54-217ENST00000514987 CMTR1Q8N1G2 835 aaKnown RBP17.01■□□□□ 0.31
NUP54-217ENST00000514987 PYM1Q9BRP8 204 aaKnown RBP17.01■□□□□ 0.31
NUP54-217ENST00000514987 XDHP47989 1333 aa17.01■□□□□ 0.31
NUP54-217ENST00000514987 BAG3O95817 575 aa17■□□□□ 0.31
NUP54-217ENST00000514987 TNNT1P13805 278 aa17■□□□□ 0.31
NUP54-217ENST00000514987 PRDX5P30044 214 aa17■□□□□ 0.31
NUP54-217ENST00000514987 PTF1AQ7RTS3 328 aa17■□□□□ 0.31
NUP54-217ENST00000514987 DGKHQ86XP1 1220 aa17■□□□□ 0.31
NUP54-217ENST00000514987 OXER1Q8TDS5 423 aa17■□□□□ 0.31
NUP54-217ENST00000514987 ANKS1AQ92625 1134 aa17■□□□□ 0.31
NUP54-217ENST00000514987 SMARCE1Q969G3 411 aa17■□□□□ 0.31
NUP54-217ENST00000514987 VPS54Q9P1Q0 977 aa17■□□□□ 0.31
NUP54-217ENST00000514987 TSPY2A6NKD2 308 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 POLR2DO15514 142 aaKnown RBP16.99■□□□□ 0.31
NUP54-217ENST00000514987 PRDM1O75626 825 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 PLEKHA8P1O95397 391 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 TUBB4AP04350 444 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 CALML3P27482 149 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 GNAQP50148 359 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 PPP4CP60510 307 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 CCZ1BP86790 482 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 CCZ1P86791 482 aaPredicted RBP16.99■□□□□ 0.31
NUP54-217ENST00000514987 FAM177A1Q8N128 213 aaPredicted RBP16.99■□□□□ 0.31
NUP54-217ENST00000514987 CNBD1Q8NA66 436 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 ANKIB1Q9P2G1 1089 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 CNTNAP5Q8WYK1 1306 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 ROBO3Q96MS0 1386 aa16.99■□□□□ 0.31
NUP54-217ENST00000514987 SFPQP23246 707 aaKnown RBP eCLIP16.98■□□□□ 0.31
NUP54-217ENST00000514987 HMGB2P26583 209 aaKnown RBP16.98■□□□□ 0.31
NUP54-217ENST00000514987 SARSP49591 514 aaKnown RBP16.98■□□□□ 0.31
NUP54-217ENST00000514987 C12orf60Q5U649 245 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 TMC6Q7Z403 805 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 ZNF287Q9HBT7 754 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 SH3GLB2Q9NR46 395 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 TNRC6CQ9HCJ0 1690 aaKnown RBP16.98■□□□□ 0.31
NUP54-217ENST00000514987 CCP110O43303 1012 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 SERPINC1P01008 464 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 SCG2P13521 617 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 LMOD1P29536 600 aaPredicted RBP16.98■□□□□ 0.31
NUP54-217ENST00000514987 USP5P45974 858 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 SYCP1Q15431 976 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 PFKFB3Q16875 520 aaPredicted RBP16.98■□□□□ 0.31
NUP54-217ENST00000514987 FOXP4Q8IVH2 680 aaPredicted RBP16.98■□□□□ 0.31
NUP54-217ENST00000514987 CCDC112Q8NEF3 446 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 TNFRSF25Q93038 417 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 C16orf45Q96MC5 204 aaPredicted RBP16.98■□□□□ 0.31
NUP54-217ENST00000514987 CSRNP2Q9H175 543 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 KAT14Q9H8E8 782 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 MCM9Q9NXL9 1143 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 SERTAD1Q9UHV2 236 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 MAN1B1Q9UKM7 699 aa16.98■□□□□ 0.31
NUP54-217ENST00000514987 SBF2Q86WG5 1849 aa16.97■□□□□ 0.31
NUP54-217ENST00000514987 RIOK3O14730 519 aaKnown RBP16.97■□□□□ 0.31
NUP54-217ENST00000514987 ACTN4O43707 911 aaKnown RBP16.97■□□□□ 0.31
NUP54-217ENST00000514987 ERCC5P28715 1186 aaPredicted RBP16.97■□□□□ 0.31
NUP54-217ENST00000514987 UBASH3AP57075 661 aa16.97■□□□□ 0.31
NUP54-217ENST00000514987 MORC3Q14149 939 aa16.97■□□□□ 0.31
NUP54-217ENST00000514987 NFIXQ14938 502 aa16.97■□□□□ 0.31
NUP54-217ENST00000514987 PTPN14Q15678 1187 aa16.97■□□□□ 0.31
NUP54-217ENST00000514987 ISM2Q6H9L7 571 aa16.97■□□□□ 0.31
NUP54-217ENST00000514987 SMIM5Q71RC9 77 aa16.97■□□□□ 0.31
NUP54-217ENST00000514987 SRBD1Q8N5C6 995 aaKnown RBP16.97■□□□□ 0.31
NUP54-217ENST00000514987 SPATA20Q8TB22 786 aa16.97■□□□□ 0.31
NUP54-217ENST00000514987 ENOX1Q8TC92 643 aaKnown RBP16.97■□□□□ 0.31
NUP54-217ENST00000514987 TCP11L1Q9NUJ3 509 aa16.97■□□□□ 0.31
NUP54-217ENST00000514987 PSDA5PKW4 1024 aaPredicted RBP16.96■□□□□ 0.31
NUP54-217ENST00000514987 SMIM22K7EJ46 135 aa16.96■□□□□ 0.31
NUP54-217ENST00000514987 ATP2B4P23634 1241 aa16.96■□□□□ 0.31
NUP54-217ENST00000514987 RBM10P98175 930 aaKnown RBP16.96■□□□□ 0.31
NUP54-217ENST00000514987 TTC38Q5R3I4 469 aa16.96■□□□□ 0.31
NUP54-217ENST00000514987 CEP135Q66GS9 1140 aa16.96■□□□□ 0.31
NUP54-217ENST00000514987 TXNRD3Q86VQ6 643 aa16.96■□□□□ 0.31
NUP54-217ENST00000514987 CCAR2Q8N163 923 aaKnown RBP16.96■□□□□ 0.31
NUP54-217ENST00000514987 CERKQ8TCT0 537 aa16.96■□□□□ 0.31
NUP54-217ENST00000514987 RPGRQ92834 1020 aaKnown RBP16.96■□□□□ 0.31
NUP54-217ENST00000514987 HSD3B7Q9H2F3 369 aa16.96■□□□□ 0.31
NUP54-217ENST00000514987 MKRN1Q9UHC7 482 aaKnown RBP16.96■□□□□ 0.31
NUP54-217ENST00000514987 CTIFO43310 598 aaKnown RBP16.95■□□□□ 0.3
NUP54-217ENST00000514987 SLFN14P0C7P3 912 aa16.95■□□□□ 0.3
NUP54-217ENST00000514987 ATP2B1P20020 1258 aa16.95■□□□□ 0.3
NUP54-217ENST00000514987 NLRP5P59047 1200 aa16.95■□□□□ 0.3
NUP54-217ENST00000514987 ARID5BQ14865 1188 aa16.95■□□□□ 0.3
NUP54-217ENST00000514987 GLIPR1L2Q4G1C9 344 aa16.95■□□□□ 0.3
NUP54-217ENST00000514987 FAM47AQ5JRC9 791 aa16.95■□□□□ 0.3
NUP54-217ENST00000514987 SPECC1Q5M775 1068 aa16.95■□□□□ 0.3
NUP54-217ENST00000514987 FAM196AQ6ZSG2 479 aa16.95■□□□□ 0.3
NUP54-217ENST00000514987 NYAP1Q6ZVC0 841 aa16.95■□□□□ 0.3
NUP54-217ENST00000514987 GJD4Q96KN9 370 aaPredicted RBP16.95■□□□□ 0.3
NUP54-217ENST00000514987 ONECUT3O60422 494 aaPredicted RBP16.94■□□□□ 0.3
NUP54-217ENST00000514987 CYP2D6P10635 497 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 PLCG2P16885 1265 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 ST5P78524 1137 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 ATP2C1P98194 919 aaPredicted RBP16.94■□□□□ 0.3
NUP54-217ENST00000514987 TFAP4Q01664 338 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 GRIN1Q05586 938 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 CFAP100Q494V2 611 aa16.94■□□□□ 0.3
NUP54-217ENST00000514987 GALNT17Q6IS24 598 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms